Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04110 523 / 2e-175 SDD1 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) AT5G67360 518 / 5e-174 ARA12 Subtilase family protein (.1) AT3G14067 507 / 2e-169 Subtilase family protein (.1) AT2G05920 506 / 3e-169 Subtilase family protein (.1) AT1G01900 485 / 6e-161 SBTI1.1, ATSBT1.1 subtilase family protein (.1) AT3G14240 483 / 4e-160 Subtilase family protein (.1) AT4G34980 464 / 1e-152 SLP2 subtilisin-like serine protease 2 (.1) AT2G04160 444 / 4e-145 AIR3 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) AT5G51750 436 / 9e-142 ATSBT1.3 subtilase 1.3 (.1) AT5G59810 426 / 5e-138 ATSBT5.4 Subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007036 [exp] 988 / 0 AT5G67360 564 / 0.0 Subtilase family protein (.1) Lus10006693 [exp] 930 / 0 AT5G67360 563 / 0.0 Subtilase family protein (.1) Lus10008921 [exp] 841 / 0 AT5G67360 377 / 7e-122 Subtilase family protein (.1) Lus10006689 [exp] 790 / 0 AT2G05920 563 / 0.0 Subtilase family protein (.1) Lus10028895 [exp] 787 / 0 AT5G67360 566 / 0.0 Subtilase family protein (.1) Lus10007033 [exp] 785 / 0 AT5G67360 551 / 0.0 Subtilase family protein (.1) Lus10008919 [exp] 784 / 0 AT5G67360 561 / 0.0 Subtilase family protein (.1) Lus10007044 [exp] 762 / 0 AT1G04110 590 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Lus10029570 [exp] 759 / 0 AT5G67360 550 / 0.0 Subtilase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G113700 [exp] 804 / 0 AT1G04110 538 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.019G006570 [exp] 792 / 0 AT1G04110 568 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.003G118500 [exp] 786 / 0 AT1G04110 557 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.003G118700 [exp] 785 / 0 AT1G04110 585 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.003G118800 [exp] 762 / 0 AT1G04110 585 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.014G074600 [exp] 558 / 0 AT1G01900 788 / 0.0 subtilase family protein (.1) Potri.002G256300 [exp] 523 / 7e-176 AT1G04110 1020 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.006G141200 [exp] 520 / 1e-174 AT2G05920 1103 / 0.0 Subtilase family protein (.1) Potri.003G067000 [exp] 496 / 3e-165 AT3G14067 969 / 0.0 Subtilase family protein (.1) Potri.004G173900 [exp] 491 / 3e-163 AT4G34980 1108 / 0.0 subtilisin-like serine protease 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0570 [flax] [poplar] PPP-I PF05922 [flax] [poplar] Inhibitor_I9 Peptidase inhibitor I9 CL0570 [flax] [poplar] PF00082 [flax] [poplar] Peptidase_S8 Subtilase family CL0364 [flax] [poplar] Leu-IlvD PF02225 [flax] [poplar] PA PA domain
Representative CDS sequence Show only first row Show all	>Lus10028893 pacid=23177128 polypeptide=Lus10028893 locus=Lus10028893.g ID=Lus10028893.BGIv1.0 annot-version=v1.0 ATGAACATCTCCACTCCATCCCACCCAGCATCTCTTGTTCTCTTCATCGGCAAAGAGAACAAGAAGTGCAAGATGTTGGGCCATATTATGTTTCTACTTG TTGCTTCTTCTATGTTCTGTTTCTCCCAGACAGAAGAAGTAGTTCCTGGAACAAATGCACTGAATACATATCTGGTATTTGTGGAGAAACCTCTTGGCAT AGAATCATTCGAATCGGAGGATCTAGACAGGTACTACCAGCAGTTCCTGCCAGTTACTGAACTAAGCTCTGACGATTCACGGATGGTACACTCTTACCAC CAAGTGGCCACAGGATTCGCTGCGAAACTCACCAGGGAAGAGCTCGAGACGATGAAATCGAAGCAAGGGTTCGTGTCAGCGCGTCCTGAGAGAATCCTGT CTCTTCAGACTACTTACACTCCAAAATTCTTGGGGCTAAATCAGAACTCAGGGTTATGGAACACTTCAAACTATGTGAAAGGAGTCATTGTTGGTGTTCT TGATACTGGAGTAACACCGAACCATCCTTCATTTAGTGACAAAGGCATGCCTCCTCCCCCCGCGAAATGGAAAGGGAAATGCGAGCTAAAGGAAGGAGCT TGCAACAACAAGCTTATCGGTGCTCGAAACCTCGTTTCGAGCAGCGATTCCGTGGCCGATGAGGAAGGCCACGGGACTCACACTGCCAGCACGGTAGCTG GCAGTGCTGTGTTAAATGCCAATGCTTTAGGGCAAGGTTCCGGAACAGCTGTTGGAATGGCACCCATGGCTCACTTGGCCATATACAAAGTGTGTGGCCC ACAAGGTTGTCCTGATAGTGCAATATTGGCAGCAATTGATGCTGCAGTTGGGGACGGTGTTGATGTTCTATCACTCTCACTCGGTGGGGACTCGGCTCCA TTTTTCGACGATGGAATCGCGATCGGAGCGTTCGGTGCGATCAAGAAGGGAGTTTTTGTCAGCTGTGCTGCAGGGAACAATGGTCCGGGTACCGGAACTC TGTCTAATGAAGCCCCATGGATTCTGACCGTTGGAGCTAGCACTGTTGATAGACAGATGATATCAACTGTTTATCTTGGCAACAAAAAAGAGTTTGATGG TCAAACCCTTTTCCAGCCGAAGGATTTCGATTCCGAAAAAATGTTGCCACTTGTTTATGCAGGCTCAGCTGATAACTCATCAGCTGTGTTCTGTGCACCT GGATCATTAAGCCATCTTTATGTCAAGGGCAAAATAGTCGTCTGTGAAATCGGAGGCCAAATCAAAAGACTTGATAAAGGAATCGAAGTGAAAGCAAACG GTGGAGCTGCAATGATCCTGGTTAATAACAAAGATTATGGTTTCACAACATTAGCTGATGCTCATGAGCTACCAGCATCACACGTCAGCTATGAAGCAGG GAATTCCATCAAGGGTTACATCAACTCCACATCATCGCCGGTTGCAAAAATTGCGTTCAAAGGAACCGTGATTCGCAAGCAAAATGCTCCCCAAGTTGCT TCCTTTTCATCGAGGGGTCCTAGCCAATCGAGCCCCGGGATCATGAAACCCGACATCATTGGACCTGGTGTAAGCACATTAGCTGCTTGGCCAACTCCTC TGGACGAGTTAGCCAACAACAACAATGGTTCGAACTTCAATATGATATCAGGAACATCAATGGCATGCCCTCATCTAAGCGGCATTGCAGCTTTGCTCAG AAGTGCTCATCCGGATTGGTCACCAGCTGCAGTAAAATCAGCCATGATGACGACAGCACATTTGACTCAAACCGGTGGGCAGCCGATTTCGGATGAGCAG CATCTTCTAGCCGACATGTTCGATATGGGATCCGGTCATATAAATCCGACTGGAGCCAGCAATCCCGGACTGGTTTATGACATCCAGCCGGAAGACTATG TTCCTTACCTATGTGGTTTGGGTTACAACAATGCTCAGGTGTCCACCATTGTGCAGCAGAAGGTCAAATGCTTTTCTGATGAATCGATATCCGAAGCTGA GCTGAACTACCCGTCTTTCGTGGTACAGTTGGGTTCTCAGCCAGTGACGTACACGAGAACGGTCACTAATGTTGGGAAGGCGAACTCAGTTTACAAAGTG GAGGTGTATGCACCAGAAGAAGCAGTGGGGATTGAAGTTAAGCCTAGTGAGATTGCTTTCAGTAAGTTGAATGAGAAGGCGAAATATTCGGTGACATTCA TGGCGAAGAAGGGGACGAGTGCGAGGTTTGTTCAAGGGAGCCTGTTTTGGGTGGCTGATGGGTACAGTGTGAAGAGTCCTTTTGGTATCATATTTGAGTA A
AA sequence Show only first row Show all	>Lus10028893 pacid=23177128 polypeptide=Lus10028893 locus=Lus10028893.g ID=Lus10028893.BGIv1.0 annot-version=v1.0 MNISTPSHPASLVLFIGKENKKCKMLGHIMFLLVASSMFCFSQTEEVVPGTNALNTYLVFVEKPLGIESFESEDLDRYYQQFLPVTELSSDDSRMVHSYH QVATGFAAKLTREELETMKSKQGFVSARPERILSLQTTYTPKFLGLNQNSGLWNTSNYVKGVIVGVLDTGVTPNHPSFSDKGMPPPPAKWKGKCELKEGA CNNKLIGARNLVSSSDSVADEEGHGTHTASTVAGSAVLNANALGQGSGTAVGMAPMAHLAIYKVCGPQGCPDSAILAAIDAAVGDGVDVLSLSLGGDSAP FFDDGIAIGAFGAIKKGVFVSCAAGNNGPGTGTLSNEAPWILTVGASTVDRQMISTVYLGNKKEFDGQTLFQPKDFDSEKMLPLVYAGSADNSSAVFCAP GSLSHLYVKGKIVVCEIGGQIKRLDKGIEVKANGGAAMILVNNKDYGFTTLADAHELPASHVSYEAGNSIKGYINSTSSPVAKIAFKGTVIRKQNAPQVA SFSSRGPSQSSPGIMKPDIIGPGVSTLAAWPTPLDELANNNNGSNFNMISGTSMACPHLSGIAALLRSAHPDWSPAAVKSAMMTTAHLTQTGGQPISDEQ HLLADMFDMGSGHINPTGASNPGLVYDIQPEDYVPYLCGLGYNNAQVSTIVQQKVKCFSDESISEAELNYPSFVVQLGSQPVTYTRTVTNVGKANSVYKV EVYAPEEAVGIEVKPSEIAFSKLNEKAKYSVTFMAKKGTSARFVQGSLFWVADGYSVKSPFGIIFE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10028893 [exp]	0	1
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10011997 [exp]	1.4	0.9804
AT5G14570		ATNRT2.7	high affinity nitrate transpor...		Lus10008767 [exp]	5.3	0.9774
					Lus10008326 [exp]	11.5	0.9863
AT1G78760			F-box/RNI-like superfamily pro...		Lus10006714 [exp]	14.5	0.9202
AT4G01950		ATGPAT3, GPAT3	glycerol-3-phosphate acyltrans...		Lus10002421 [exp]	16.1	0.9709
AT1G05010		ACO4, EAT1, EFE	ethylene forming enzyme, ethyl...		Lus10035334 [exp]	17.1	0.8818
AT3G24130			Pectin lyase-like superfamily ...		Lus10016678 [exp]	21.0	0.9797
AT2G18300	bHLH	bHLH064, HBI1	basic helix-loop-helix (bHLH) ...		Lus10026008 [exp]	23.6	0.9688
AT3G19950			RING/U-box superfamily protein...		Lus10017722 [exp]	24.3	0.8796
AT4G26740		CLO1, ATPXG1, A...	CALEOSIN1, ARABIDOPSIS THALIAN...		Lus10023732 [exp]	24.6	0.9786

Compare expression of checked genes

Lus10028893 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.