Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45550 440 / 1e-150 CYP76C4 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) AT1G33720 422 / 1e-143 CYP76C6 "cytochrome P450, family 76, subfamily C, polypeptide 6", cytochrome P450, family 76, subfamily C, polypeptide 6 (.1) AT2G45560 414 / 2e-140 CYP76C1 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) AT2G45580 408 / 6e-138 CYP76C3 "cytochrome P450, family 76, subfamily C, polypeptide 3", cytochrome P450, family 76, subfamily C, polypeptide 3 (.1) AT2G45570 404 / 2e-136 CYP76C2 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1) AT3G61040 401 / 1e-135 CYP76C7 "cytochrome P450, family 76, subfamily C, polypeptide 7", cytochrome P450, family 76, subfamily C, polypeptide 7 (.1.2) AT1G33730 335 / 2e-111 CYP76C5 "cytochrome P450, family 76, subfamily C, polypeptide 5", cytochrome P450, family 76, subfamily C, polypeptide 5 (.1) AT3G52970 337 / 4e-110 CYP76G1 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) AT5G07990 320 / 7e-104 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT4G12300 318 / 7e-103 CYP706A4 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028898 [exp] 684 / 0 AT2G45550 488 / 1e-169 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10008917 [exp] 676 / 0 AT2G45550 479 / 8e-166 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10008935 [exp] 667 / 0 AT2G45550 476 / 5e-165 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10028897 [exp] 664 / 0 AT2G45550 473 / 2e-163 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10008936 [exp] 664 / 0 AT2G45550 499 / 6e-174 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10008918 [exp] 652 / 0 AT2G45550 483 / 1e-167 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10028852 [exp] 649 / 0 AT2G45550 471 / 7e-163 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10008938 [exp] 628 / 0 AT2G45550 457 / 2e-157 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10028881 [exp] 617 / 0 AT2G45550 477 / 4e-165 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G113900 [exp] 564 / 0 AT2G45550 496 / 1e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.003G118200 [exp] 541 / 0 AT2G45550 438 / 9e-150 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150100 [exp] 437 / 1e-149 AT2G45550 510 / 3e-178 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150200 [exp] 422 / 1e-143 AT2G45550 496 / 1e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150500 [exp] 421 / 1e-143 AT2G45550 497 / 5e-173 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150300 [exp] 418 / 3e-142 AT2G45550 503 / 2e-175 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150400 [exp] 416 / 2e-141 AT2G45550 495 / 2e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.006G094700 [exp] 356 / 9e-118 AT3G52970 459 / 4e-158 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Potri.015G138900 [exp] 349 / 4e-115 AT1G33720 359 / 6e-119 "cytochrome P450, family 76, subfamily C, polypeptide 6", cytochrome P450, family 76, subfamily C, polypeptide 6 (.1) Potri.012G137200 [exp] 349 / 6e-115 AT2G45550 374 / 1e-124 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10028896 pacid=23177187 polypeptide=Lus10028896 locus=Lus10028896.g ID=Lus10028896.BGIv1.0 annot-version=v1.0 ATGGACTTGTTACAGATCATTACCTGCTTGTTCTGCCTCCTAACAACCTTGGCCATCCTCCGCCGCTTCTTCTCCGACCAAACTACGGCCAATCTCCCGC CCGGTCCTACCCGCCTTCCGATCATAGGAAACCTCCACAACCTGGACGACAAACCACACAAATCCCTAGCCCAACTTGCCAAAATTCACGGTCCCATAAT GAGCCTCAAGCTTGGCCAAGTAACCACAATCGTCGCTTCCTCTCGGGCTGTAGCCAAACAAATTCTCCAAAAACACGACCATATCCTCTGCAACCGCCAG CTTACACAGGCACTATGCGCCAGCGATCACCACGAATTCGGCATGCCGTTGCTCCCTTTCGAGTCATCCAAGTGGAGGAACCTCAGGAAAATCTGCAACA CTCATCTCTTCGCCTCCCAGAGGCTGGATTCCAACCAAGGCCTTCGGTGGGAAAAGGTTCTGGAGTTTCTCAAAGTTGTTCGACAAAATGCCAACGAGGG AAAGGCGGTGGATATTGGAAGGGCGGCATTCAGGGCAGTTTTCGGCTCTATTTCGACGACGGTTCTTTCGTTGGATTTGATGGAGGAGGTCCGTACTACT ACTTCATGGTGTGGTTTTGATGCTGCGGAGTTCGAAGAGGCCACGAGGGGTATAATGACTGAATCCGGTAAGCCCAATTTGGGAGACTTTTTCCCTCTTC TCAGCGCAATGGATTTGCAGGGGATACAAAGGAGGATGAGAAGTCATTCCGAGAAGGTGATGAATCTGTTCGGAAGAATAATCGAGGAGCGATTGAAGAA GCGAAAGTCGGAGGAGTATGTATCGAGTAATGACATGCTGGATACGCTGCTGGACATTGTTGATCAAGAGAGTCGGGAAGCTTCAATGGATCTAGATCTC ATCAATCACTTATTGTTGGATTTGTTTGTTGCTGGGACTGATACCATTGCAACCACAGTAGAATGGTCAATGGTTGAACTGCTTCGCAATCCCAACACAT TTGCTAAAACAAGGACAGAACTAGACCAGATCATTGGAAAAGACAATCATCTTCATGAATCCAACATTGCCAGGTTACCTTTTCTACAAGCAATAATCAA AGAGACTTTGAGGTTGCATCCAGCAGGTCCTCTGCTGTTTCCTAGAAAGGCAGGATCGGATGTGGTCATTTCTGGATTTAATGTGCCAAAAGGAGCACAA ATTATAGTTAATGCGTGGGCTATCGGCAGAGATCCAGCCATATGGGACAACCCAGACTCATTTATGCCGGAGAGATTTATGGGATCGGAGATTAATGCCG GAGGGGACAGCTTCGAATTCATACCATTCGGAGGTGGAAGAAGGATCTGTCCTGGATTGCCACTGGCAATGAGGATGTTGCATATGATGGTGGGTTCATT AGTTCATCGATTTGACTGGAAGCTCGAAGATGGAGTTGACCCATTGAGCTTGGACATGGATGATAAGTTTGGGATTACTTTGCAAAAGGCTAAACCTTTG ATTGCTTTTCCCGTAGCCATATAA
AA sequence Show only first row Show all	>Lus10028896 pacid=23177187 polypeptide=Lus10028896 locus=Lus10028896.g ID=Lus10028896.BGIv1.0 annot-version=v1.0 MDLLQIITCLFCLLTTLAILRRFFSDQTTANLPPGPTRLPIIGNLHNLDDKPHKSLAQLAKIHGPIMSLKLGQVTTIVASSRAVAKQILQKHDHILCNRQ LTQALCASDHHEFGMPLLPFESSKWRNLRKICNTHLFASQRLDSNQGLRWEKVLEFLKVVRQNANEGKAVDIGRAAFRAVFGSISTTVLSLDLMEEVRTT TSWCGFDAAEFEEATRGIMTESGKPNLGDFFPLLSAMDLQGIQRRMRSHSEKVMNLFGRIIEERLKKRKSEEYVSSNDMLDTLLDIVDQESREASMDLDL INHLLLDLFVAGTDTIATTVEWSMVELLRNPNTFAKTRTELDQIIGKDNHLHESNIARLPFLQAIIKETLRLHPAGPLLFPRKAGSDVVISGFNVPKGAQ IIVNAWAIGRDPAIWDNPDSFMPERFMGSEINAGGDSFEFIPFGGGRRICPGLPLAMRMLHMMVGSLVHRFDWKLEDGVDPLSLDMDDKFGITLQKAKPL IAFPVAI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10028896 [exp]	0	1
AT4G05030			Copper transport protein famil...		Lus10039093 [exp]	1.0	0.8881
					Lus10012084 [exp]	1.7	0.8587
AT3G48950			Pectin lyase-like superfamily ...		Lus10027516 [exp]	2.4	0.8176
AT4G10120		ATSPS4F	Sucrose-phosphate synthase fam...		Lus10006184 [exp]	5.2	0.7667
AT4G30320			CAP (Cysteine-rich secretory p...		Lus10019993 [exp]	5.3	0.8547
AT2G04040		ATDTX1	detoxification 1, MATE efflux ...		Lus10009132 [exp]	6.9	0.8764
AT4G31115			Protein of unknown function (D...		Lus10025683 [exp]	10.1	0.7396
AT4G02270		RHS13	root hair specific 13 (.1)		Lus10013419 [exp]	11.4	0.8488
AT1G12560		ATHEXPALPHA1.26...	expansin A7 (.1)		Lus10006711 [exp]	13.0	0.7740
					Lus10012326 [exp]	15.2	0.6332

Compare expression of checked genes

Lus10028896 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.