Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45550 442 / 1e-151 CYP76C4 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) AT1G33720 432 / 3e-147 CYP76C6 "cytochrome P450, family 76, subfamily C, polypeptide 6", cytochrome P450, family 76, subfamily C, polypeptide 6 (.1) AT2G45580 429 / 4e-146 CYP76C3 "cytochrome P450, family 76, subfamily C, polypeptide 3", cytochrome P450, family 76, subfamily C, polypeptide 3 (.1) AT3G61040 421 / 3e-143 CYP76C7 "cytochrome P450, family 76, subfamily C, polypeptide 7", cytochrome P450, family 76, subfamily C, polypeptide 7 (.1.2) AT2G45560 421 / 3e-143 CYP76C1 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) AT2G45570 421 / 5e-143 CYP76C2 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1) AT1G33730 355 / 2e-119 CYP76C5 "cytochrome P450, family 76, subfamily C, polypeptide 5", cytochrome P450, family 76, subfamily C, polypeptide 5 (.1) AT5G07990 343 / 2e-112 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT4G12300 321 / 6e-104 CYP706A4 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) AT4G12320 320 / 1e-103 CYP706A6 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008918 [exp] 768 / 0 AT2G45550 483 / 1e-167 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10008936 [exp] 699 / 0 AT2G45550 499 / 6e-174 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10036079 [exp] 692 / 0 AT2G45550 481 / 5e-167 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10028898 [exp] 690 / 0 AT2G45550 488 / 1e-169 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10008917 [exp] 681 / 0 AT2G45550 479 / 8e-166 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10028852 [exp] 679 / 0 AT2G45550 471 / 7e-163 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10008935 [exp] 679 / 0 AT2G45550 476 / 5e-165 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10008938 [exp] 662 / 0 AT2G45550 457 / 2e-157 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10028881 [exp] 658 / 0 AT2G45550 477 / 4e-165 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G113900 [exp] 614 / 0 AT2G45550 496 / 1e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.003G118200 [exp] 572 / 0 AT2G45550 438 / 9e-150 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150100 [exp] 451 / 3e-155 AT2G45550 510 / 3e-178 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150300 [exp] 444 / 3e-152 AT2G45550 503 / 2e-175 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150400 [exp] 441 / 5e-151 AT2G45550 495 / 2e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150500 [exp] 440 / 9e-151 AT2G45550 497 / 5e-173 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150200 [exp] 438 / 7e-150 AT2G45550 496 / 1e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.006G094700 [exp] 355 / 2e-117 AT3G52970 459 / 4e-158 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Potri.007G084200 [exp] 350 / 1e-115 AT3G26300 385 / 1e-129 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G167900 [exp] 349 / 6e-115 AT5G07990 369 / 1e-122 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10028897 pacid=23177201 polypeptide=Lus10028897 locus=Lus10028897.g ID=Lus10028897.BGIv1.0 annot-version=v1.0 ATGGAGCTACTACTGATGATCACCTGCTTACTCTGCCTCCTCACAACCTTGGCAATCCTTCTCCGGTTCCAGTCAAACCAAACTCCGGTCACTCTCCCGC CGGGCCCTCCCTGCCTTCCGATCATAGGTAACCTTCACAATCTAGGCGACAAACCTCACCGATCCTTAGCCCATCTTGCCTCTATTCACGGTCCCTTAAT GAGCCTGAAACTCGGCCAAGTCACAACAATTGTTGCTTCTTCTCCACCGATGGCCAAACAAATCCTCCAAAAGCATGACCAGATCCTCTCCGACCGCCAT CTCATCTTGGCCATCCGCGCCCCCAACCACGCCACCCGCCCCCACACCCACCACGAATACGGCCTGCCTTGGCTCCCCGTGGGACCCAAGTGGAGGAACC TCCGGAAAGTATGCAACACGTACCTATTCACCACCCAGAAGTTGGATTTGAACCAGGAGTCCAGGGAGAAGAGGATTCATGAGCTCTTGGAAGGTGTTCG ACAAAATGCCTGTAAGGGGAAAGCGGTTGATATTGGGGAGGTGGCGTTCAGGACGACTTTTAGCTCTCTGTCGATGACTGTGCTTTCATTGGATCTAACG GACGAAAGGTCGAAGGATGCAACGGAGTTTAAGGAGGTCGCGAGGAGTATAATGGATGAAGCTGGGAAGCCGAACTTGGGAGACTATTTTCCTGTATTGG GTAAGTTGGATTTGCAGGGGATACATCGGCGAATGAGGACTCATTTCGGTAAGGTGTTGAATTTGTTCGGAAGGGTAATCGACGAACGGTTGAAGAATCG AAAGTCCGAGGCGTATGTAACGTGCAATGACATGATGGATACGTTGCTGGATATTGTTGATCAAGAGAATGCAGAGGCTTCCATGGATCTAGATCTCATC AAGCACTTGTTCTTGGTTCTATTTGTAGCCGGTACCGATACAAGTTCAAGCACGTTGGAATGGGCAATGGCAGAGTTGCTCCGCAATCCAAACACATTTG CTAAAGCAAGGGAAGAACTCGATCGAGTTATTGGAAAAGACAAACATCTTCAAGAATCTGACATCCTTCGGTTACCTTATCTACAAGCAATAATTAAGGA GACATTTAGGCTACACCCATCGGTTCCCCTCCTTCTTCCTCGCAAGGCAAGAGCCGACGTGGAAGTGTCCGGGTTCACCGTGCCAAAGGGAGCACAAATT ATGGTGAATGCATGGGCTATTGGTAGAGATTCGACCATATGGAGCGATTCGAAGTCGTTCATGCCCGAGAGGTTCATGGAATCAGAGGTTGATGTTAGAG GGAATAGTTTTGAGTTGATACCATTCGGCGGTGGAAGAAGGATCTGTCCTGGATTGCCACTGGCAATGAGGATGTTGCATATGATGTTAGGTTCCTTAGT TCATTGGTTTAATTGGAAGTTGGAGGATGGAGTCGAGCCGGAGAGTTTGGATATGGAAGAGAAGTTTGGGATCAGTTTGCAGAAAGCAAAACCATTGCTG GCTATTCCCACGCCTAGATAA
AA sequence Show only first row Show all	>Lus10028897 pacid=23177201 polypeptide=Lus10028897 locus=Lus10028897.g ID=Lus10028897.BGIv1.0 annot-version=v1.0 MELLLMITCLLCLLTTLAILLRFQSNQTPVTLPPGPPCLPIIGNLHNLGDKPHRSLAHLASIHGPLMSLKLGQVTTIVASSPPMAKQILQKHDQILSDRH LILAIRAPNHATRPHTHHEYGLPWLPVGPKWRNLRKVCNTYLFTTQKLDLNQESREKRIHELLEGVRQNACKGKAVDIGEVAFRTTFSSLSMTVLSLDLT DERSKDATEFKEVARSIMDEAGKPNLGDYFPVLGKLDLQGIHRRMRTHFGKVLNLFGRVIDERLKNRKSEAYVTCNDMMDTLLDIVDQENAEASMDLDLI KHLFLVLFVAGTDTSSSTLEWAMAELLRNPNTFAKAREELDRVIGKDKHLQESDILRLPYLQAIIKETFRLHPSVPLLLPRKARADVEVSGFTVPKGAQI MVNAWAIGRDSTIWSDSKSFMPERFMESEVDVRGNSFELIPFGGGRRICPGLPLAMRMLHMMLGSLVHWFNWKLEDGVEPESLDMEEKFGISLQKAKPLL AIPTPR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10028897 [exp]	0	1
AT2G18150			Peroxidase superfamily protein...		Lus10028337 [exp]	1.7	0.9664
AT2G40260	GARP		Homeodomain-like superfamily p...		Lus10007513 [exp]	2.8	0.9663
AT5G25140		CYP71B13	"cytochrome P450, family 71, s...		Lus10018263 [exp]	3.0	0.9584
AT2G20030			RING/U-box superfamily protein...		Lus10034953 [exp]	3.5	0.9461
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10001108 [exp]	4.5	0.9475
AT1G28340		AtRLP4	receptor like protein 4 (.1)		Lus10013994 [exp]	4.5	0.9358
AT3G26770			NAD(P)-binding Rossmann-fold s...		Lus10012575 [exp]	5.7	0.9365
AT3G10660		ATCPK2, CPK2	calmodulin-domain protein kina...		Lus10033400 [exp]	5.9	0.9435
AT2G34070		TBL37	TRICHOME BIREFRINGENCE-LIKE 37...		Lus10015309 [exp]	6.0	0.9403
AT5G59530			2-oxoglutarate (2OG) and Fe(II...		Lus10033875 [exp]	7.7	0.9373

Compare expression of checked genes

Lus10028897 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.