Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45550 463 / 1e-159 CYP76C4 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) AT3G61040 450 / 1e-154 CYP76C7 "cytochrome P450, family 76, subfamily C, polypeptide 7", cytochrome P450, family 76, subfamily C, polypeptide 7 (.1.2) AT1G33720 446 / 5e-153 CYP76C6 "cytochrome P450, family 76, subfamily C, polypeptide 6", cytochrome P450, family 76, subfamily C, polypeptide 6 (.1) AT2G45560 423 / 5e-144 CYP76C1 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) AT2G45570 420 / 9e-143 CYP76C2 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1) AT2G45580 408 / 3e-138 CYP76C3 "cytochrome P450, family 76, subfamily C, polypeptide 3", cytochrome P450, family 76, subfamily C, polypeptide 3 (.1) AT1G33730 341 / 5e-114 CYP76C5 "cytochrome P450, family 76, subfamily C, polypeptide 5", cytochrome P450, family 76, subfamily C, polypeptide 5 (.1) AT3G52970 335 / 8e-110 CYP76G1 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) AT5G07990 334 / 3e-109 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT5G25140 322 / 6e-105 CYP71B13 "cytochrome P450, family 71, subfamily B, polypeptide 13", cytochrome P450, family 71, subfamily B, polypeptide 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008917 [exp] 832 / 0 AT2G45550 479 / 8e-166 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10008936 [exp] 692 / 0 AT2G45550 499 / 6e-174 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10028852 [exp] 690 / 0 AT2G45550 471 / 7e-163 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10008935 [exp] 683 / 0 AT2G45550 476 / 5e-165 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10028897 [exp] 669 / 0 AT2G45550 473 / 2e-163 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10028896 [exp] 653 / 0 AT2G45550 464 / 3e-160 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10008918 [exp] 649 / 0 AT2G45550 483 / 1e-167 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10028881 [exp] 634 / 0 AT2G45550 477 / 4e-165 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10008938 [exp] 628 / 0 AT2G45550 457 / 2e-157 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G113900 [exp] 583 / 0 AT2G45550 496 / 1e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.003G118200 [exp] 541 / 0 AT2G45550 438 / 9e-150 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150100 [exp] 438 / 3e-150 AT2G45550 510 / 3e-178 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150300 [exp] 427 / 1e-145 AT2G45550 503 / 2e-175 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150500 [exp] 424 / 2e-144 AT2G45550 497 / 5e-173 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150200 [exp] 424 / 2e-144 AT2G45550 496 / 1e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150400 [exp] 421 / 1e-143 AT2G45550 495 / 2e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.015G138900 [exp] 352 / 2e-116 AT1G33720 359 / 6e-119 "cytochrome P450, family 76, subfamily C, polypeptide 6", cytochrome P450, family 76, subfamily C, polypeptide 6 (.1) Potri.006G094700 [exp] 352 / 3e-116 AT3G52970 459 / 4e-158 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Potri.012G137200 [exp] 347 / 2e-114 AT2G45550 374 / 1e-124 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10028898 pacid=23177233 polypeptide=Lus10028898 locus=Lus10028898.g ID=Lus10028898.BGIv1.0 annot-version=v1.0 ATGGATTTGTTATTCATCATCACCTGCTTGCTCTGCCTCCTCTCCACCTTAACAATCCTCCTCCTCCGCTTCCTCTCCGACAAAACTCCGTCCAATCTCC CACCGGGCCCTTCCCGCCTTCCAATCATAGGTAACCTCCACAACCTGGGCGAAAAACCCCACCAATCTCTAGCCCATCTCGCCAAGATTCATGGTCCCTT AATGAGCCTCAAGCTCGGCCAAATTACTACAATCGTCGCTTCCTCTCCTGCTGTAGCCAAAGAAATCCTCCAAAAGCACGATCAAGTCCTATCCTACCGG CAGCTCAGCCGCGCCTTCTGTAACAACGGTCACCATGAGTGTGGTATGTCGTTGCTCCCTGTGGGACCTAAGTGGAGGAACCTCAGAAAAGTATGCAACA CTTATCTCTTCACTGCCCAGAAGTTGGATTCCAACCAGGACCTCCGGAGAGAAAAAATTCAGGAGTTCCTCAAAGGTGTTCGAAAAAATGCCTCAGAGAG AAAGGCGGTGGATATTGGAGGAGCAGCGTTCAGGGCGAGTCTCAGTGCTATGTCGATGATGGTTATGTCGTTGGATTTGACGGCAGATGAGGGATCGAGG GACGTTGTGGAATTCAAGGAAGCTACGAGGGGTTCAATCGATGAAGCCGGTAAGCCCAATTTGGGAGATTTTTTCCCAATTCTTGGGTTTCTGGATTTGC AGGGGATAGAGAGGAGGATGAAAAGTCATTCGACGAAGATAATGAATTTATTCGAAAGGTTAATCGAGAAAAGATTGAAGAAGCGAAAATCAGAGGCGTA TGTAACGGATAATGACATGTTGGATACGCTCCTCGACATCGCTGAAGGAAATCTTGAGGCTTCCATGGATATAAATGTCATCAAACACTTGTTCTTGGAT TTATTTGTTGCTGGAACTGATACAACATCAAGCACGTTAGAATGGGCCATGGTTGAACTGCTCCGCAATCCCAACGCATTTGCTAAAGTAAGGAAGGAAC TGAACGAAGTCATTGGAAAAGGCAATCATCTTCAAGAATCTGATATCGCACGGTTACCTTTCTTACAAGCAGTAATCAAAGAGACATTTAGGTTGCACCC GGCTGTTCCCTTTCTAGTTCCTAGAAAGGCAGGAACTGACGTGGAAATTTGCGGATTCACCGTGCCTAAAGGAGCACAAATCCTAGTGAATGCATGGGCT ATTGGTAGAGATCCAACCATATGGGAAAATCCGGATTCATTCGTGCCAGAGAGATTCATGGAATCGGTGATTGATGTTAGAGGGAATGGTTTCGAACTGA TACCATTCGGAGGCGGAAGAAGGATTTGTCCTGGATTGCCATTGGCAACGAGAATGTTGCATCTGATGCTGGGTTCATTAGTTCATTGGTTTGATTGGAA GCTCGAAAATGGAGTCGATCCGATGAGTTTGGATATGGAAGAGGAGTTTGGAGTCACTTTGAAGAAAGCTAAACCTTTACTTGTTGTCCCCGCACTCATA TAA
AA sequence Show only first row Show all	>Lus10028898 pacid=23177233 polypeptide=Lus10028898 locus=Lus10028898.g ID=Lus10028898.BGIv1.0 annot-version=v1.0 MDLLFIITCLLCLLSTLTILLLRFLSDKTPSNLPPGPSRLPIIGNLHNLGEKPHQSLAHLAKIHGPLMSLKLGQITTIVASSPAVAKEILQKHDQVLSYR QLSRAFCNNGHHECGMSLLPVGPKWRNLRKVCNTYLFTAQKLDSNQDLRREKIQEFLKGVRKNASERKAVDIGGAAFRASLSAMSMMVMSLDLTADEGSR DVVEFKEATRGSIDEAGKPNLGDFFPILGFLDLQGIERRMKSHSTKIMNLFERLIEKRLKKRKSEAYVTDNDMLDTLLDIAEGNLEASMDINVIKHLFLD LFVAGTDTTSSTLEWAMVELLRNPNAFAKVRKELNEVIGKGNHLQESDIARLPFLQAVIKETFRLHPAVPFLVPRKAGTDVEICGFTVPKGAQILVNAWA IGRDPTIWENPDSFVPERFMESVIDVRGNGFELIPFGGGRRICPGLPLATRMLHLMLGSLVHWFDWKLENGVDPMSLDMEEEFGVTLKKAKPLLVVPALI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10028898 [exp]	0	1
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10025902 [exp]	2.4	0.9952
AT5G43440			2-oxoglutarate (2OG) and Fe(II...		Lus10022192 [exp]	3.9	0.9933
AT3G48320		CYP71A21	"cytochrome P450, family 71, s...		Lus10043311 [exp]	4.5	0.9933
					Lus10014508 [exp]	5.7	0.9933
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10016995 [exp]	6.8	0.9864
					Lus10032178 [exp]	7.4	0.9929
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Lus10033633 [exp]	8.0	0.9922
AT1G13340			Regulator of Vps4 activity in ...		Lus10033552 [exp]	8.8	0.9860
AT3G48320		CYP71A21	"cytochrome P450, family 71, s...		Lus10019460 [exp]	9.2	0.9924
					Lus10005629 [exp]	10.5	0.9917

Compare expression of checked genes

Lus10028898 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.