Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36400 117 / 3e-31 GRF ATGRF3 growth-regulating factor 3 (.1) AT3G52910 112 / 1e-29 GRF ATGRF4 growth-regulating factor 4 (.1) AT4G37740 112 / 3e-29 GRF ATGRF2 growth-regulating factor 2 (.1) AT3G13960 107 / 1e-27 GRF ATGRF5 growth-regulating factor 5 (.1) AT2G06200 101 / 1e-26 GRF ATGRF6 growth-regulating factor 6 (.1) AT5G53660 102 / 5e-26 GRF ATGRF7 growth-regulating factor 7 (.1) AT2G22840 100 / 7e-25 GRF ATGRF1 growth-regulating factor 1 (.1) AT2G45480 94 / 2e-22 GRF ATGRF9 growth-regulating factor 9 (.1) AT4G24150 79 / 3e-17 GRF ATGRF8 growth-regulating factor 8 (.1) AT1G09060 41 / 0.0003 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008916 [exp] 254 / 2e-87 AT4G37740 115 / 2e-30 growth-regulating factor 2 (.1) Lus10020352 [exp] 122 / 9e-34 AT3G13960 167 / 2e-48 growth-regulating factor 5 (.1) Lus10009533 [exp] 120 / 3e-32 AT3G13960 162 / 7e-45 growth-regulating factor 5 (.1) Lus10014380 [exp] 108 / 2e-29 AT2G36400 181 / 5e-55 growth-regulating factor 3 (.1) Lus10004455 [exp] 105 / 3e-27 AT3G13960 150 / 8e-42 growth-regulating factor 5 (.1) Lus10037668 [exp] 102 / 9e-27 AT3G13960 156 / 1e-45 growth-regulating factor 5 (.1) Lus10000473 [exp] 104 / 1e-26 AT3G13960 187 / 5e-55 growth-regulating factor 5 (.1) Lus10033441 [exp] 104 / 2e-26 AT3G13960 191 / 3e-56 growth-regulating factor 5 (.1) Lus10015651 [exp] 100 / 3e-26 AT3G13960 155 / 5e-45 growth-regulating factor 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G077500 [exp] 120 / 3e-33 AT3G13960 160 / 1e-45 growth-regulating factor 5 (.1) Potri.001G114000 [exp] 116 / 7e-33 AT4G37740 119 / 2e-31 growth-regulating factor 2 (.1) Potri.003G065000 [exp] 116 / 2e-31 AT3G13960 200 / 4e-61 growth-regulating factor 5 (.1) Potri.001G132600 [exp] 115 / 4e-31 AT4G37740 142 / 6e-38 growth-regulating factor 2 (.1) Potri.001G169100 [exp] 114 / 2e-30 AT3G13960 206 / 4e-63 growth-regulating factor 5 (.1) Potri.019G042300 [exp] 110 / 3e-29 AT3G13960 157 / 2e-44 growth-regulating factor 5 (.1) Potri.006G143200 [exp] 110 / 6e-29 AT3G13960 188 / 7e-56 growth-regulating factor 5 (.1) Potri.006G115200 [exp] 108 / 3e-28 AT3G52910 244 / 3e-77 growth-regulating factor 4 (.1) Potri.018G065400 [exp] 108 / 4e-28 AT3G13960 181 / 3e-53 growth-regulating factor 5 (.1) Potri.007G007100 [exp] 108 / 1e-27 AT2G22840 325 / 6e-104 growth-regulating factor 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08879 [flax] [poplar] WRC WRC PF08880 [flax] [poplar] QLQ QLQ
Representative CDS sequence Show only first row Show all	>Lus10028899 pacid=23177145 polypeptide=Lus10028899 locus=Lus10028899.g ID=Lus10028899.BGIv1.0 annot-version=v1.0 ATGGAGAACAATCATAGCAGTTATCAATCAGAGTCGTCGTCGCTGTCTCAAAGAATCCCAACTTTCAATATTCCTCGTCTCTCCTCCGACTCCCCAACCA TTGGACTGGGACTAGGACTCATGACTGGCAGTGGCAGCAAAGATGAAGATGATCATGATCATGATATTACGAATCTGCAGTTGGGGAACTCGAGATTGGG GGTAGTGTTCACAGTGTCGCAGATTCAAGAGCTGCAGTTGCAGTGGATGATCTACAAGTATATAGAGGCAGGATTAAGAGTTCCACAGAGTCTCCTTGTC CCTATCTGGAATAGCTTACATTCAGCTGTACCTTTGATCAACACCCCAACCTTGTCCCTATCTTGGACGCAGTGGAGGGAGATGAGCAGGTACAAAAAAG GGGTGGAATTGGATGACGAACCAGGAAGGTGCAGAAGAACTGATGGCAAGAAATGGAGGTGCAGCAAGGAATCCCTCCCTGATCATAAGTACTGCCAGAA GCACATGCACCGCGGCCGTCTCAACCGCAACCGTTCAAGAAAGCCTGTGGAATAA
AA sequence Show only first row Show all	>Lus10028899 pacid=23177145 polypeptide=Lus10028899 locus=Lus10028899.g ID=Lus10028899.BGIv1.0 annot-version=v1.0 MENNHSSYQSESSSLSQRIPTFNIPRLSSDSPTIGLGLGLMTGSGSKDEDDHDHDITNLQLGNSRLGVVFTVSQIQELQLQWMIYKYIEAGLRVPQSLLV PIWNSLHSAVPLINTPTLSLSWTQWREMSRYKKGVELDDEPGRCRRTDGKKWRCSKESLPDHKYCQKHMHRGRLNRNRSRKPVE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36400	GRF	ATGRF3	growth-regulating factor 3 (.1...		Lus10028899 [exp]	0	1
					Lus10015383 [exp]	1.4	0.8097
					Lus10037930 [exp]	6.9	0.7745
AT4G18380			F-box family protein (.1.2)		Lus10013431 [exp]	13.6	0.8049
AT1G33030			O-methyltransferase family pro...		Lus10014825 [exp]	21.5	0.7331
AT3G61230	LIM	PLIM2c	PLIM2c, GATA type zinc finger ...		Lus10029859 [exp]	25.3	0.7757
AT1G62340		ALE1	ABNORMAL LEAF-SHAPE 1, ABNORMA...		Lus10015559 [exp]	27.3	0.7472
AT4G18210		ATPUP10	purine permease 10 (.1)		Lus10026130 [exp]	32.2	0.7544
AT1G13570			F-box/RNI-like superfamily pro...		Lus10041818 [exp]	35.0	0.7273
AT5G06900		CYP93D1	"cytochrome P450, family 93, s...		Lus10027796 [exp]	35.7	0.7344
					Lus10019410 [exp]	37.3	0.7693

Compare expression of checked genes

Lus10028899 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.