Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22850 216 / 9e-69 SNARE associated Golgi protein family (.1.2) AT1G12450 216 / 1e-68 SNARE associated Golgi protein family (.1) AT4G12000 200 / 1e-62 SNARE associated Golgi protein family (.1) AT2G02370 162 / 1e-47 SNARE associated Golgi protein family (.1.2) AT1G22850 53 / 9e-08 SNARE associated Golgi protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008915 [exp] 382 / 7e-134 AT1G12450 338 / 5e-117 SNARE associated Golgi protein family (.1) Lus10007018 [exp] 306 / 5e-104 AT1G12450 364 / 6e-127 SNARE associated Golgi protein family (.1) Lus10006674 [exp] 304 / 4e-103 AT1G12450 365 / 4e-127 SNARE associated Golgi protein family (.1) Lus10012163 [exp] 155 / 4e-45 AT2G02370 401 / 4e-141 SNARE associated Golgi protein family (.1.2) Lus10007583 [exp] 132 / 3e-36 AT2G02370 399 / 2e-140 SNARE associated Golgi protein family (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G117400 [exp] 256 / 2e-84 AT1G12450 343 / 1e-118 SNARE associated Golgi protein family (.1) Potri.001G114600 [exp] 254 / 8e-84 AT1G12450 317 / 3e-108 SNARE associated Golgi protein family (.1) Potri.001G078700 [exp] 152 / 7e-44 AT2G02370 390 / 2e-136 SNARE associated Golgi protein family (.1.2) Potri.003G151800 [exp] 145 / 3e-41 AT2G02370 377 / 2e-131 SNARE associated Golgi protein family (.1.2) Potri.013G099600 [exp] 52 / 1e-07 AT1G22850 305 / 6e-102 SNARE associated Golgi protein family (.1) Potri.019G071900 [exp] 52 / 2e-07 AT1G22850 330 / 8e-113 SNARE associated Golgi protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09335 [flax] [poplar] SNARE_assoc SNARE associated Golgi protein
Representative CDS sequence Show only first row Show all	>Lus10028900 pacid=23177341 polypeptide=Lus10028900 locus=Lus10028900.g ID=Lus10028900.BGIv1.0 annot-version=v1.0 ATGACGTATAGAAATGAAGATGACAGCTTGGTCTCTGAGCTGAGGATGAGAGTGGATGACGATGATGATGTTGATAAGAGCGGGTACATGAGATTGAGAG GGGACGATGCTGATGCTGATGAAGAAGAAGGGTTTCTTGAGAAACCAGGGTGTAGTTTCTTCTGCTGGAAGTTGAGATGGTGTGTTGTTTGGTATTGGGT CAGGCTCGTAACTCTGTTGGCTGTTGTGGGTGGTGTGGCTTTCGTTGTTTTCAGATGGGTTGGCCCCTTCTTCATCGAAAACGAAATTATTCCTATTATA AACTGGGAGAAATCAACGTTTACTACTCCACAGCTAGGGCTACTGGTCTTCCTGTCAGTTGCATTATTCCCAATCCTGCTCCTTCCATCTTCTCCTTCAA TGTGGATAGCTGGGATGACTTTTGGCTATGGATACGGATTCTTATTGATCACCGTCGCCTTGGCAGTTGGAATCTCACTTCCATTTTGTATTGGAAATCT GTTCCTGCATAAAATTCGGGTGCAGTTAGAGAAGTATCCAAAGCAGGCTGCCATACTGAGAGCAGCAGGTGAAGGAAATTGGTTCCATCAGTTTCGTGCA GTGGCGCTTATAAGAATTTCGCCATTTCCTTACGTCCTGTATAATTACTGTGCCGTTGCAACTCATGTCAAGTATGGCCCTTATCTGCTAGGGTCGTTGG TGGGTACGGCGCCAGACACTTTTTTGACACTCTATACTGGGATCATCATATTGACCCTGGCAGATGCTTCAAAAGAACATCACAATCTCTCAGCCCCACA GATCGCCTTCAATGTCATTGGTTTCTGTTGCACAGCAACTACCGCAGTGTTTTTCACTCTCTACGCTAAGAGACGGCTCAAAACACTGCCAGAGGAACCT CTGTTATCGTAG
AA sequence Show only first row Show all	>Lus10028900 pacid=23177341 polypeptide=Lus10028900 locus=Lus10028900.g ID=Lus10028900.BGIv1.0 annot-version=v1.0 MTYRNEDDSLVSELRMRVDDDDDVDKSGYMRLRGDDADADEEEGFLEKPGCSFFCWKLRWCVVWYWVRLVTLLAVVGGVAFVVFRWVGPFFIENEIIPII NWEKSTFTTPQLGLLVFLSVALFPILLLPSSPSMWIAGMTFGYGYGFLLITVALAVGISLPFCIGNLFLHKIRVQLEKYPKQAAILRAAGEGNWFHQFRA VALIRISPFPYVLYNYCAVATHVKYGPYLLGSLVGTAPDTFLTLYTGIIILTLADASKEHHNLSAPQIAFNVIGFCCTATTAVFFTLYAKRRLKTLPEEP LLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12450			SNARE associated Golgi protein...		Lus10028900 [exp]	0	1
AT5G64500			Major facilitator superfamily ...		Lus10011580 [exp]	1.0	0.8899
AT2G25290		Phox1	Phox1, Octicosapeptide/Phox/Be...		Lus10008035 [exp]	2.4	0.8460
AT2G28320			Pleckstrin homology (PH) and l...		Lus10016094 [exp]	2.8	0.8480
AT4G29950			Ypt/Rab-GAP domain of gyp1p su...		Lus10001628 [exp]	6.0	0.7929
AT1G64610			Transducin/WD40 repeat-like su...		Lus10003206 [exp]	7.1	0.8150
AT3G05710		ATSYP43, SYP43	syntaxin of plants 43 (.1.2)		Lus10031466 [exp]	7.7	0.7528
AT1G08420		BSL2	BRI1 suppressor 1 (BSU1)-like ...		Lus10004100 [exp]	8.2	0.8415
AT3G05345			Chaperone DnaJ-domain superfam...		Lus10000158 [exp]	8.7	0.7980
AT5G06140		ATSNX1	ARABIDOPSIS THALIANA SORTING N...		Lus10016994 [exp]	8.7	0.7894
AT5G01990			Auxin efflux carrier family pr...		Lus10035610 [exp]	11.0	0.8043

Compare expression of checked genes

Lus10028900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.