Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60890 59 / 2e-12 ZPR2 LITTLE ZIPPER 2, protein binding (.1.2) AT2G45450 40 / 5e-05 ZPR1 LITTLE ZIPPER 1, protein binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008913 [exp] 175 / 1e-58 AT3G60890 58 / 2e-12 LITTLE ZIPPER 2, protein binding (.1.2) Lus10006673 [exp] 118 / 5e-36 AT3G60890 47 / 4e-08 LITTLE ZIPPER 2, protein binding (.1.2) Lus10007017 [exp] 94 / 2e-26 AT3G60890 48 / 3e-08 LITTLE ZIPPER 2, protein binding (.1.2) Lus10017055 [exp] 46 / 2e-07 AT3G52770 77 / 5e-20 LITTLE ZIPPER 3, protein binding (.1) Lus10021375 [exp] 46 / 2e-07 AT3G52770 77 / 3e-20 LITTLE ZIPPER 3, protein binding (.1) Lus10022725 [exp] 44 / 9e-07 AT3G52770 73 / 5e-19 LITTLE ZIPPER 3, protein binding (.1) Lus10014188 [exp] 42 / 3e-06 AT3G52770 72 / 1e-18 LITTLE ZIPPER 3, protein binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G117200 [exp] 119 / 2e-36 AT3G60890 63 / 4e-14 LITTLE ZIPPER 2, protein binding (.1.2) Potri.001G114900 [exp] 102 / 1e-29 AT3G60890 57 / 1e-11 LITTLE ZIPPER 2, protein binding (.1.2) Potri.014G071200 [exp] 67 / 2e-15 AT3G60890 62 / 1e-13 LITTLE ZIPPER 2, protein binding (.1.2) Potri.002G149600 [exp] 62 / 2e-13 AT3G60890 65 / 1e-14 LITTLE ZIPPER 2, protein binding (.1.2) Potri.006G083201 [exp] 49 / 5e-08 AT3G52770 54 / 2e-10 LITTLE ZIPPER 3, protein binding (.1) Potri.010G237600 [exp] 39 / 5e-05 AT3G52770 49 / 7e-10 LITTLE ZIPPER 3, protein binding (.1) Potri.008G021766 [exp] 35 / 0.001 AT3G52770 51 / 1e-10 LITTLE ZIPPER 3, protein binding (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028902 pacid=23177331 polypeptide=Lus10028902 locus=Lus10028902.g ID=Lus10028902.BGIv1.0 annot-version=v1.0 ATGTGTATGATCAGAGAAGACAGGTCCACTGTTTCTGTTCTGGAGACTTCAAAAAGAAGGCAACAACATCCCAAGAAGCCTAGACTTCAAGTCATTGGGC TCACCAGAAACAGGAGAAGGTGTGGTGAGGGAACTGGGGAGAAGGATATGGAGATTAAGAATTTGAAGCTATACTTGGAAAACCAAACCATCTTAGAAGA AAATGAGAAGCTGAGGCAGAAAGCATACCTTCTTCACAGAGAGAATTTAGCCTTGATGAGGGAGTTCCAAGAGAAGTTCCCTCATTTCGATCGCTTCTCT GCGGCTCTGTTTCTTCTGTACAAATATTAG
AA sequence Show only first row Show all	>Lus10028902 pacid=23177331 polypeptide=Lus10028902 locus=Lus10028902.g ID=Lus10028902.BGIv1.0 annot-version=v1.0 MCMIREDRSTVSVLETSKRRQQHPKKPRLQVIGLTRNRRRCGEGTGEKDMEIKNLKLYLENQTILEENEKLRQKAYLLHRENLALMREFQEKFPHFDRFS AALFLLYKY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G60890		ZPR2	LITTLE ZIPPER 2, protein bindi...		Lus10028902 [exp]	0	1
AT2G30395	OFP	ATOFP17, OFP17	ovate family protein 17 (.1)		Lus10009922 [exp]	2.2	0.9732
AT5G60020		LAC17, ATLAC17	laccase 17 (.1)		Lus10019122 [exp]	3.5	0.9678
AT3G60890		ZPR2	LITTLE ZIPPER 2, protein bindi...		Lus10008913 [exp]	5.3	0.9663
AT3G27200			Cupredoxin superfamily protein...		Lus10022350 [exp]	6.9	0.9667
					Lus10016903 [exp]	10.5	0.9463
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10026499 [exp]	11.0	0.9582
AT2G04480			unknown protein		Lus10032584 [exp]	11.8	0.9388
AT5G12870	MYB	ATMYB46	myb domain protein 46 (.1)		Lus10002559 [exp]	12.2	0.9518
AT2G04850			Auxin-responsive family protei...		Lus10001736 [exp]	12.4	0.9646
AT5G02640			unknown protein		Lus10025282 [exp]	14.1	0.9533

Compare expression of checked genes

Lus10028902 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.