Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12440 186 / 9e-61 A20/AN1-like zinc finger family protein (.1.2) AT4G12040 179 / 4e-58 AtSAP7 stress-associated protein 7, A20/AN1-like zinc finger family protein (.1.2) AT4G22820 170 / 2e-54 A20/AN1-like zinc finger family protein (.1.2) AT2G36320 129 / 2e-38 A20/AN1-like zinc finger family protein (.1) AT2G27580 125 / 4e-37 A20/AN1-like zinc finger family protein (.1.2) AT1G51200 113 / 4e-32 A20/AN1-like zinc finger family protein (.1.2.3.4) AT4G25380 98 / 1e-26 AtSAP10, SAP10 Arabidopsis thaliana stress-associated protein 10, stress-associated protein 10 (.1) AT3G52800 99 / 2e-26 A20/AN1-like zinc finger family protein (.1) AT3G12630 88 / 2e-22 SAP5 stress associated protein 5, A20/AN1-like zinc finger family protein (.1) AT4G14225 73 / 7e-17 A20/AN1-like zinc finger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008912 [exp] 261 / 3e-90 AT1G12440 202 / 4e-67 A20/AN1-like zinc finger family protein (.1.2) Lus10006671 [exp] 229 / 9e-78 AT1G12440 204 / 3e-68 A20/AN1-like zinc finger family protein (.1.2) Lus10007015 [exp] 229 / 1e-77 AT1G12440 207 / 3e-69 A20/AN1-like zinc finger family protein (.1.2) Lus10031833 [exp] 130 / 1e-38 AT1G51200 186 / 5e-61 A20/AN1-like zinc finger family protein (.1.2.3.4) Lus10031262 [exp] 127 / 2e-37 AT1G51200 187 / 2e-61 A20/AN1-like zinc finger family protein (.1.2.3.4) Lus10003246 [exp] 126 / 4e-37 AT2G36320 201 / 3e-67 A20/AN1-like zinc finger family protein (.1) Lus10035603 [exp] 103 / 9e-29 AT2G36320 152 / 3e-48 A20/AN1-like zinc finger family protein (.1) Lus10030150 [exp] 100 / 3e-27 AT4G12040 119 / 8e-35 stress-associated protein 7, A20/AN1-like zinc finger family protein (.1.2) Lus10015697 [exp] 88 / 3e-22 AT3G12630 178 / 1e-57 stress associated protein 5, A20/AN1-like zinc finger family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G115000 [exp] 200 / 3e-66 AT4G12040 169 / 4e-54 stress-associated protein 7, A20/AN1-like zinc finger family protein (.1.2) Potri.003G117100 [exp] 192 / 2e-63 AT1G12440 170 / 2e-54 A20/AN1-like zinc finger family protein (.1.2) Potri.016G051700 [exp] 130 / 1e-38 AT1G51200 164 / 3e-52 A20/AN1-like zinc finger family protein (.1.2.3.4) Potri.003G205500 [exp] 130 / 2e-38 AT1G51200 202 / 4e-67 A20/AN1-like zinc finger family protein (.1.2.3.4) Potri.006G056500 [exp] 129 / 2e-38 AT1G51200 167 / 2e-53 A20/AN1-like zinc finger family protein (.1.2.3.4) Potri.001G018600 [exp] 129 / 2e-38 AT1G51200 203 / 2e-67 A20/AN1-like zinc finger family protein (.1.2.3.4) Potri.009G144100 [exp] 125 / 5e-37 AT2G27580 166 / 5e-53 A20/AN1-like zinc finger family protein (.1.2) Potri.015G131900 [exp] 103 / 1e-28 AT4G22820 123 / 2e-36 A20/AN1-like zinc finger family protein (.1.2) Potri.004G184300 [exp] 101 / 2e-27 AT2G27580 156 / 4e-49 A20/AN1-like zinc finger family protein (.1.2) Potri.012G130000 [exp] 100 / 4e-27 AT4G22820 121 / 1e-35 A20/AN1-like zinc finger family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01754 [flax] [poplar] zf-A20 A20-like zinc finger PF01428 [flax] [poplar] zf-AN1 AN1-like Zinc finger
Representative CDS sequence Show only first row Show all	>Lus10028903 pacid=23177309 polypeptide=Lus10028903 locus=Lus10028903.g ID=Lus10028903.BGIv1.0 annot-version=v1.0 ATGGGTTCGCAGCAAAACGACGGCACGAGCTTCCCACAATCGGAGCCGATTCTCTGCGTCAACGGGTGCGGCTTCTTCGGATCGGCGTCGAACATGAACC TCTGCTCCAAGTGCTACCGTGACCTGCGGGTGACGGAGGAGCAAGCGGCGTCGGCGAAGGCTGTTATGGAGAAGACCCTCTGCTTCAAATCGAATAAGGC GGAGGCAGTCGCAGCTGATGTTGTTGCCGTCTCGAAATCCGCTGTGGCTGAGGCGATTGCGACGGAGAAGGCGGTGCTTGAAGGGTCTTCGTCATCATCG TCGGCGGCGGTGGCGGTTGATGTGGTGAAGGCGGCGAACAGGTGTTTGACCTGCAATAAGAGGGTTGGATTCACGGGGTTTAAGTGCAAGTGCGGCAGCA CTTTCTGCGGTTCTCATAGGTACCCGGAGAACCACGATTGCGACTTTGATTTCAAGCAAGCTGGGAGGAACGCAATCGCCAAGGCCAATCCTGTCGTGAA GGCGGATAAGGTCGATAGGTTCTGA
AA sequence Show only first row Show all	>Lus10028903 pacid=23177309 polypeptide=Lus10028903 locus=Lus10028903.g ID=Lus10028903.BGIv1.0 annot-version=v1.0 MGSQQNDGTSFPQSEPILCVNGCGFFGSASNMNLCSKCYRDLRVTEEQAASAKAVMEKTLCFKSNKAEAVAADVVAVSKSAVAEAIATEKAVLEGSSSSS SAAVAVDVVKAANRCLTCNKRVGFTGFKCKCGSTFCGSHRYPENHDCDFDFKQAGRNAIAKANPVVKADKVDRF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12440			A20/AN1-like zinc finger famil...		Lus10028903 [exp]	0	1
AT3G52850		VSR1;1, GFS1, B...	VACUOLAR SORTING RECEPTOR 1;1,...		Lus10025220 [exp]	2.2	0.9317
AT5G41350			RING/U-box superfamily protein...		Lus10032270 [exp]	2.6	0.9442
AT5G53850			haloacid dehalogenase-like hyd...		Lus10015966 [exp]	3.5	0.9368
AT1G10650			SBP (S-ribonuclease binding pr...		Lus10029136 [exp]	3.9	0.9374
					Lus10008052 [exp]	4.0	0.9267
AT5G46860		SGR3, ATVAM3, A...	SHOOT GRAVITROPISM 3, ARABIDOP...		Lus10000311 [exp]	4.2	0.9261
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10010293 [exp]	4.7	0.9243
AT2G42610		LSH10	LIGHT SENSITIVE HYPOCOTYLS 10,...		Lus10029219 [exp]	5.1	0.9117
AT4G02080		ASAR1, ATSARA1C...	secretion-associated RAS super...		Lus10010926 [exp]	5.5	0.9097
AT3G07560		APM2, PEX13	ABERRANT PEROXISOME MORPHOLOGY...		Lus10012306 [exp]	5.7	0.9389

Compare expression of checked genes

Lus10028903 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.