Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71140 231 / 6e-71 MATE efflux family protein (.1) AT1G66760 199 / 3e-59 MATE efflux family protein (.1.2) AT1G15150 197 / 2e-58 MATE efflux family protein (.1) AT1G15160 196 / 1e-57 MATE efflux family protein (.1) AT1G64820 192 / 3e-56 MATE efflux family protein (.1) AT2G04040 189 / 3e-55 ATDTX1 detoxification 1, MATE efflux family protein (.1) AT1G66780 188 / 9e-55 MATE efflux family protein (.1) AT2G04100 185 / 2e-53 MATE efflux family protein (.1) AT2G04080 183 / 8e-53 MATE efflux family protein (.1) AT1G15170 182 / 1e-52 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008911 [exp] 505 / 2e-178 AT1G71140 430 / 1e-147 MATE efflux family protein (.1) Lus10009132 [exp] 256 / 1e-80 AT2G04040 489 / 9e-171 detoxification 1, MATE efflux family protein (.1) Lus10018136 [exp] 222 / 2e-67 AT1G71140 571 / 0.0 MATE efflux family protein (.1) Lus10018135 [exp] 218 / 2e-66 AT1G15170 524 / 0.0 MATE efflux family protein (.1) Lus10042732 [exp] 218 / 4e-66 AT1G15170 562 / 0.0 MATE efflux family protein (.1) Lus10029694 [exp] 214 / 1e-64 AT1G15170 563 / 0.0 MATE efflux family protein (.1) Lus10028504 [exp] 206 / 1e-61 AT1G64820 556 / 0.0 MATE efflux family protein (.1) Lus10009140 [exp] 205 / 4e-61 AT1G64820 560 / 0.0 MATE efflux family protein (.1) Lus10006171 [exp] 198 / 2e-57 AT1G71140 452 / 5e-154 MATE efflux family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G093400 [exp] 257 / 4e-81 AT1G71140 482 / 8e-168 MATE efflux family protein (.1) Potri.004G094700 [exp] 254 / 5e-80 AT2G04100 425 / 3e-145 MATE efflux family protein (.1) Potri.010G116900 [exp] 222 / 1e-67 AT1G15170 598 / 0.0 MATE efflux family protein (.1) Potri.017G120500 [exp] 211 / 3e-63 AT2G04100 468 / 3e-162 MATE efflux family protein (.1) Potri.004G094900 [exp] 209 / 5e-63 AT1G71140 503 / 3e-176 MATE efflux family protein (.1) Potri.017G120400 [exp] 209 / 5e-63 AT2G04100 508 / 3e-178 MATE efflux family protein (.1) Potri.017G120600 [exp] 200 / 3e-59 AT1G66760 468 / 2e-162 MATE efflux family protein (.1.2) Potri.008G126500 [exp] 199 / 1e-58 AT1G15170 546 / 0.0 MATE efflux family protein (.1) Potri.010G117000 [exp] 198 / 3e-58 AT1G15170 545 / 0.0 MATE efflux family protein (.1) Potri.004G094800 [exp] 190 / 9e-56 AT2G04100 479 / 2e-167 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE
Representative CDS sequence Show only first row Show all	>Lus10028904 pacid=23177208 polypeptide=Lus10028904 locus=Lus10028904.g ID=Lus10028904.BGIv1.0 annot-version=v1.0 ATGGTCAATGTGATCGATGCCGAAGAGCAAGGAGCGAACATCTTCGCGACGACATCGCGCAAGGACTTCGCCGAAGAACTAAAGCGAATCGCCCGCATTG CAGGCCCCATGATCGCCGTAATGGCACTTCAATACCTACAGCAAACAGTGTCCATCGTAATAGTGGGGCACATCAGCCAGCTGGCGCTCACCACCGTTGG GATCGCCACCGCCCTCACCAACGTCACCGGCTACAGCGTCCTCTACGGGATGACCGGCGGGCTGTCCACCCTCTGCGGCCAGGCTTACGGCGCCGGTCAG TACAAGAAGCTCGGTACCTACGCTTACAGCGGCATCATCTCCTTATTCCTGATGTGCCCTCCAATCTGCCTGCTTTGGGCCTTCACGGGCCGGCTTCTCC GGGTTACGGGCCAGGACCCGGTCGTTGCTGACGGGGCGCGAGACTTTTGTCTTTGGTCCGTTATCGGGCTGGTGGGGACGGCTGTGGTGGGCCCGCTGAC GAGGTTCTTGCAAGCACAGAGTGTGGTGGTCCCCATGCTTCTGGCTTCCACGATGGCGTTTTGTCTGCACGCGCTGATGAGCTGGATCCTCGCGTTTAAG CTGAGGATGGGGGACGCCAGCGTGGCAGTGGCGTTCGGGATGTCCACGTGGCTGAACGCGGCGGCGCTTGCGCTTTACGTGAAGTTTTCCGGAAAGTTTA AGGAGACTCGTGCGCCGTTTACGTGGAGTGCTTTTGGATGTATACCTGAGTTTCTCCGACTTGGGTTGCCTGCTGCTGTTATGCTTGAAATGGTGGTCTA TGGAGGTACTGACTCTACTTTCCAGCCATCTTCCCAATCCTCGATTGCAGACATCCGTTCTATCGGTGAGTCTGACAATGACTACGTTGCACTTGACAAT CCCACTGAGTCTAGGAGTTGCAGTCAGTACCCGGGTAGCGAACGAGCTAGGAGCAGGGAACCCGCGATCAGCGAGATTAGCAGTAGTGGTGGCGGTGTTT GTTGCAGTGGTGGAATCATCGATAGTGAGTATTGCTCTGTTCTTTGCAAGAGATGTGGTGGGTTATGCTTACAGCAACGACCCTCAAGTTGTGAAGCACA TTTCAACCATCATTCCTCTAATCTGCGTATTCATCGTCATGGACAGCCTCCAAGGAGTCCTCTCTGGTGGGTCTTTACTCACACCGTGAAGGCCATAAAC TGTGATAGAAAGTAA
AA sequence Show only first row Show all	>Lus10028904 pacid=23177208 polypeptide=Lus10028904 locus=Lus10028904.g ID=Lus10028904.BGIv1.0 annot-version=v1.0 MVNVIDAEEQGANIFATTSRKDFAEELKRIARIAGPMIAVMALQYLQQTVSIVIVGHISQLALTTVGIATALTNVTGYSVLYGMTGGLSTLCGQAYGAGQ YKKLGTYAYSGIISLFLMCPPICLLWAFTGRLLRVTGQDPVVADGARDFCLWSVIGLVGTAVVGPLTRFLQAQSVVVPMLLASTMAFCLHALMSWILAFK LRMGDASVAVAFGMSTWLNAAALALYVKFSGKFKETRAPFTWSAFGCIPEFLRLGLPAAVMLEMVVYGGTDSTFQPSSQSSIADIRSIGESDNDYVALDN PTESRSCSQYPGSERARSREPAISEISSSGGGVCCSGGIIDSEYCSVLCKRCGGLCLQQRPSSCEAHFNHHSSNLRIHRHGQPPRSPLWWVFTHTVKAIN CDRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71140			MATE efflux family protein (.1...		Lus10028904 [exp]	0	1
AT3G63060		EDL3	EID1-like 3 (.1)		Lus10028001 [exp]	9.3	0.7063
AT3G54670		ATSMC1, TTN8	TITAN8, STRUCTURAL MAINTENANCE...		Lus10013582 [exp]	12.8	0.6916
AT5G36228			nucleic acid binding;zinc ion ...		Lus10010788 [exp]	26.7	0.6445
AT2G33530		SCPL46	serine carboxypeptidase-like 4...		Lus10040327 [exp]	29.9	0.6971
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Lus10021871 [exp]	33.6	0.6348
					Lus10037930 [exp]	35.5	0.6778
AT3G09580			FAD/NAD(P)-binding oxidoreduct...		Lus10033264 [exp]	38.6	0.5475
AT1G75030		ATLP-3	thaumatin-like protein 3 (.1)		Lus10015705 [exp]	43.5	0.6477
					Lus10000768 [exp]	43.5	0.6833
AT4G09760			Protein kinase superfamily pro...		Lus10028696 [exp]	49.4	0.6734

Compare expression of checked genes

Lus10028904 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.