Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12390 207 / 2e-70 Cornichon family protein (.1) AT1G62880 184 / 6e-61 Cornichon family protein (.1.2) AT1G12340 176 / 9e-58 Cornichon family protein (.1) AT4G12090 165 / 1e-53 Cornichon family protein (.1) AT3G12180 127 / 1e-38 Cornichon family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004320 [exp] 233 / 2e-79 AT1G12390 173 / 1e-55 Cornichon family protein (.1) Lus10007000 [exp] 213 / 4e-72 AT1G12390 176 / 3e-57 Cornichon family protein (.1) Lus10006997 [exp] 213 / 4e-72 AT1G12390 176 / 3e-57 Cornichon family protein (.1) Lus10000384 [exp] 172 / 5e-56 AT1G12390 161 / 5e-52 Cornichon family protein (.1) Lus10009295 [exp] 145 / 1e-45 AT1G12390 142 / 7e-45 Cornichon family protein (.1) Lus10015866 [exp] 127 / 4e-39 AT1G12390 128 / 1e-39 Cornichon family protein (.1) Lus10030270 [exp] 103 / 2e-29 AT1G12390 94 / 2e-26 Cornichon family protein (.1) Lus10004023 [exp] 0 / 1 AT1G12340 101 / 5e-30 Cornichon family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G116100 [exp] 239 / 5e-83 AT1G12390 184 / 3e-61 Cornichon family protein (.1) Potri.003G116400 [exp] 228 / 2e-78 AT1G12390 182 / 2e-60 Cornichon family protein (.1) Potri.002G148500 [exp] 100 / 3e-28 AT1G12390 106 / 9e-31 Cornichon family protein (.1) Potri.016G051000 [exp] 97 / 2e-26 AT3G12180 142 / 4e-44 Cornichon family protein (.1) Potri.006G057300 [exp] 97 / 3e-26 AT3G12180 109 / 3e-31 Cornichon family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03311 [flax] [poplar] Cornichon Cornichon protein
Representative CDS sequence Show only first row Show all	>Lus10028906 pacid=23177156 polypeptide=Lus10028906 locus=Lus10028906.g ID=Lus10028906.BGIv1.0 annot-version=v1.0 ATGGGAGATCTATACGTATGGCTAATCTCCTTCTTTTTCCTTATTGCCCTACTCGTCATCATCGTCTTCCAGCTGATGTGCTTGGCAGATTTGGAGTTCG ATTACATCAATCCATATGACTCTTCATCGAGGGTAAACAAAGTGATTTTGCCAGAGTATATCACGGAAGGAGCTTTGTGCTTGTTTTACCTTCTCACAGG GCATTGGTGTATGGCTCTCTTGTGTGCTCCTTACCTCTACTACAACGTCAGGCTATACACTCGAAAACAACATCTGATAGATGTTACTGAGGTTTTCAAC TTGCTCCATGCCGAAAAGAAGCAGCGGCTCTATAAATTGTTCTACCTCATCGTCCTCCTTTTTCTAGCAATATTCTGGATGATCTTGACGGCATTGGAAG ATCACGACATGGACTGA
AA sequence Show only first row Show all	>Lus10028906 pacid=23177156 polypeptide=Lus10028906 locus=Lus10028906.g ID=Lus10028906.BGIv1.0 annot-version=v1.0 MGDLYVWLISFFFLIALLVIIVFQLMCLADLEFDYINPYDSSSRVNKVILPEYITEGALCLFYLLTGHWCMALLCAPYLYYNVRLYTRKQHLIDVTEVFN LLHAEKKQRLYKLFYLIVLLFLAIFWMILTALEDHDMD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12390			Cornichon family protein (.1)		Lus10028906 [exp]	0	1
AT3G46010		ATADF1, ADF1	actin depolymerizing factor 1 ...		Lus10024417 [exp]	1.7	0.8980
AT2G18030			Peptide methionine sulfoxide r...		Lus10028467 [exp]	2.4	0.8474
AT5G18610			Protein kinase superfamily pro...		Lus10041426 [exp]	5.2	0.8402
AT2G24220		ATPUP5	purine permease 5 (.1.2)		Lus10036272 [exp]	9.6	0.8243
AT5G35360		CAC2	acetyl Co-enzyme a carboxylase...		Lus10028753 [exp]	10.4	0.7792
AT1G14310			Haloacid dehalogenase-like hyd...		Lus10036740 [exp]	11.8	0.7590
AT3G58970		MRS2-4, MGT6	magnesium transporter 6 (.1)		Lus10015459 [exp]	12.2	0.7930
AT1G57680			unknown protein		Lus10008924 [exp]	12.5	0.7448
AT3G22540			Protein of unknown function (D...		Lus10010564 [exp]	13.3	0.8012
AT4G32530			ATPase, F0/V0 complex, subunit...		Lus10000694 [exp]	13.8	0.8131

Compare expression of checked genes

Lus10028906 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.