Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22760 632 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G29760 370 / 4e-119 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G22410 359 / 9e-116 SLO1 SLOW GROWTH 1 (.1) AT2G45350 353 / 3e-114 CRR4 CHLORORESPIRATORY REDUCTION 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G02750 349 / 1e-110 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G37570 335 / 8e-108 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT4G16835 335 / 2e-106 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G13600 330 / 2e-104 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G14820 330 / 5e-104 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G08070 328 / 2e-103 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022701 [exp] 355 / 6e-116 AT5G37570 556 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10018223 [exp] 360 / 2e-115 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014212 [exp] 353 / 5e-115 AT5G37570 561 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10015874 [exp] 347 / 6e-112 AT2G45350 687 / 0.0 CHLORORESPIRATORY REDUCTION 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10040680 [exp] 350 / 2e-111 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10009269 [exp] 332 / 1e-105 AT2G13600 874 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10033026 [exp] 330 / 1e-103 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10009290 [exp] 322 / 4e-103 AT2G45350 605 / 0.0 CHLORORESPIRATORY REDUCTION 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013540 [exp] 327 / 4e-102 AT4G02750 1075 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G116100 [exp] 765 / 0 AT4G22760 669 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G207500 [exp] 376 / 9e-124 AT5G37570 602 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.014G068800 [exp] 368 / 1e-119 AT2G45350 735 / 0.0 CHLORORESPIRATORY REDUCTION 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G044700 [exp] 352 / 3e-112 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G031600 [exp] 350 / 2e-111 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G072500 [exp] 341 / 3e-110 AT3G21470 565 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.004G217900 [exp] 343 / 1e-109 AT2G22410 530 / 0.0 SLOW GROWTH 1 (.1) Potri.001G019500 [exp] 343 / 1e-109 AT2G22410 791 / 0.0 SLOW GROWTH 1 (.1) Potri.018G040100 [exp] 338 / 7e-107 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G245300 [exp] 338 / 4e-106 AT3G22690 570 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10028907 pacid=23177132 polypeptide=Lus10028907 locus=Lus10028907.g ID=Lus10028907.BGIv1.0 annot-version=v1.0 ATGCATCGGATTTGTCTTTTCCCGGCTCGGCTCGGCGGCCCTTCCTCCTGCCTGCCGTCCGCAGCTAGCCAACCGCCGTCGACTCCCGGTAACGAAAGTC CGTACGGTTTCATCTTCATAGCTTTTGGCAGACTCCATTATCTTGAACCACTTTTGATACGCCAAATCCTACTCTCAGCCACCAACTACTCCACAAGTCT TGCACAATATGTTCGGGGCTTGCTTTACCTTTCAAGTAATCCAGATGCCTTCTCGTGGAGCTGCGCAATTAGGTACTTCTCCCAGAAAGGTCAGTTCAAG GATTCATTTTGTCTCTACGTTGAAATGTTGAGACTTGGACTTTGTCATAGTACAATTGCTGTATGTTCTACGTTGAGGGCTTGTGGTAGGATCTCATATG CGACTGCTGGCTGTTCGATTCATGCTCAAGCTTACAAGTACGGGTTTGGCAGCTGTGTCTATGTACAAACAGCCCTTGTTGATCTTTATTCAAAACTGGG TGCAATGGACACTGCACAAAAGGCTTTTGATGAGATAGCAGATAAAAATGTGGTGTCGTGGAATTCGATTCTGTCAGGGTATTTGAAGTCCGGGAACTTA GATGAAGCCAAAAGGGTGTTTGATCAGATTCCGGAGAAAGATGTTGTGTCGTGGAATTCGATGTTATCTGGATATGCTGGGGTGGGGAATATAGACGAAG CTTCTGTTATATTTCAACAGATGCCTGAAAGAAATTTAGCGTCCTGGAATGCAATGATTTCTGGACTAGTTGATTGGGGTGAGATCGAGACAGCAAGAAG CTACTTTGATGAAATGCCCCAAAGGAATAATATCTCGTGGATTACGATGATATCTGGCTACTCAAAATGCGGAGATGTTGACTCTGCCAAGGAGTTGTTT CGGAATCTTGCTAAGAAAGATCTTTTGTCATTCAATGCCATGATTTCCTGTCTTGTTAAGAATAGCAGACCACAGGAGGCTCTTCAGTTGTTCAACCAGA TGCTGAAAACTCAGGTACATATCCATCCTGATAAGATCACTCTGGTTAGTGTTATCTCTGCTTGCTCGCAAGTTGGGGACTTGACATTCGGGTCATGGAT CGAGGAGTCGTATATAAGGAATGTCGGAATTGATACAGATGATCAATTGAATACTGCACTGATCGACCTGTATGCGAAATGTGGAAACATCGAGAAAGCA AAAGAAATGTTTATCAGGCTAAACAAGAAAGATGTGGTTGCTTATAGCGCAATGATATCTGGGTTTGGAATGAACGGCAAAATCAACGAAGCCATCAAGT TGTTCGAAGCAATGGAGGAAGCTCGAGTGCCACCCAACTTAGCCACATTTACAGGGCTTTTAAGTGGATACTGCCACTCCGGTATGGTCGAAGAAGGCTA CAAATGCTTTCACGTGATGAAGGGCCACGATCTGATGCCTTCAAACGACCATTACGCGATCATGGTCGATCTCTTTGGTAGAGCGGGAAGATTAGAAGAG GCATATGAGATGATAAAGACCATGCCAATGCAGCCTCGTGCAGAGGTGTGGGGAGCTTTGCTTCTTGCTTGTAAAGTACATAACAATGTGGAGATTGGAG AGATTGCAGCTAACCATTGCCTTGAGTTGGAACCCAATACAGCTGCGTATTATTCTCTTCTTGCTAACATATATGCATCAGCTGGGAAATGGGGTGATGT TAGATGTCTGAGAAAAGCTGTCAGAGAGAAGCGATTAGGAATTTTGCCTGGGAGTAGTTGGATGGAGTCACCAACTTGA
AA sequence Show only first row Show all	>Lus10028907 pacid=23177132 polypeptide=Lus10028907 locus=Lus10028907.g ID=Lus10028907.BGIv1.0 annot-version=v1.0 MHRICLFPARLGGPSSCLPSAASQPPSTPGNESPYGFIFIAFGRLHYLEPLLIRQILLSATNYSTSLAQYVRGLLYLSSNPDAFSWSCAIRYFSQKGQFK DSFCLYVEMLRLGLCHSTIAVCSTLRACGRISYATAGCSIHAQAYKYGFGSCVYVQTALVDLYSKLGAMDTAQKAFDEIADKNVVSWNSILSGYLKSGNL DEAKRVFDQIPEKDVVSWNSMLSGYAGVGNIDEASVIFQQMPERNLASWNAMISGLVDWGEIETARSYFDEMPQRNNISWITMISGYSKCGDVDSAKELF RNLAKKDLLSFNAMISCLVKNSRPQEALQLFNQMLKTQVHIHPDKITLVSVISACSQVGDLTFGSWIEESYIRNVGIDTDDQLNTALIDLYAKCGNIEKA KEMFIRLNKKDVVAYSAMISGFGMNGKINEAIKLFEAMEEARVPPNLATFTGLLSGYCHSGMVEEGYKCFHVMKGHDLMPSNDHYAIMVDLFGRAGRLEE AYEMIKTMPMQPRAEVWGALLLACKVHNNVEIGEIAANHCLELEPNTAAYYSLLANIYASAGKWGDVRCLRKAVREKRLGILPGSSWMESPT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G22760			Tetratricopeptide repeat (TPR)...		Lus10028907 [exp]	0	1
AT3G06660			PAPA-1-like family protein / z...		Lus10016899 [exp]	10.1	0.7611
AT4G32360			Pyridine nucleotide-disulphide...		Lus10031463 [exp]	31.9	0.7066
AT3G13682		LDL2	LSD1-like2 (.1)		Lus10037885 [exp]	33.9	0.6677
AT2G40430			unknown protein		Lus10037530 [exp]	48.7	0.7040
AT1G68550	AP2_ERF	CRF10	cytokinin response factor 10, ...		Lus10034316 [exp]	60.9	0.6893
AT1G77750			Ribosomal protein S13/S18 fami...		Lus10037359 [exp]	65.5	0.6825
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10027543 [exp]	92.6	0.6490
AT2G46990	AUX_IAA	IAA20	indole-3-acetic acid inducible...		Lus10010081 [exp]	111.0	0.6217
AT3G26750			unknown protein		Lus10021459 [exp]	127.6	0.6198
AT1G18850			unknown protein		Lus10023616 [exp]	150.4	0.6278

Compare expression of checked genes

Lus10028907 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.