Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22756 288 / 4e-97 ATSMO1-2, ATSMO1, SMO1-2 sterol C4-methyl oxidase 1-2 (.1) AT4G22753 285 / 3e-96 ATSMO1-3, ATSMO1, SMO1-3 sterol 4-alpha methyl oxidase 1-3 (.1.2) AT4G12110 285 / 3e-96 ATSMO1-1, SMO1-1 sterol-4alpha-methyl oxidase 1-1 (.1) AT1G07420 184 / 3e-57 SMO2-1, ATSMO1, ATSMO2-2, SMO2-2 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2) AT2G29390 174 / 2e-54 ATSMO2-2, SMO2-2, ATSMO2, SMO2-1 Arabidopsis thaliana sterol 4-alpha-methyl-oxidase 2-2, sterol 4-alpha-methyl-oxidase 2-2 (.1.2.3.4.5) AT1G14290 57 / 4e-09 SBH2 sphingoid base hydroxylase 2 (.1) AT1G69640 56 / 5e-09 SBH1 sphingoid base hydroxylase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004321 [exp] 318 / 2e-109 AT4G12110 422 / 2e-150 sterol-4alpha-methyl oxidase 1-1 (.1) Lus10032193 [exp] 304 / 3e-103 AT4G12110 483 / 4e-174 sterol-4alpha-methyl oxidase 1-1 (.1) Lus10024555 [exp] 288 / 1e-97 AT4G12110 442 / 1e-158 sterol-4alpha-methyl oxidase 1-1 (.1) Lus10004324 [exp] 259 / 2e-86 AT4G22756 345 / 3e-120 sterol C4-methyl oxidase 1-2 (.1) Lus10004322 [exp] 252 / 3e-83 AT4G12110 357 / 2e-124 sterol-4alpha-methyl oxidase 1-1 (.1) Lus10016492 [exp] 179 / 1e-54 AT1G07420 463 / 3e-167 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2) Lus10040739 [exp] 178 / 1e-54 AT2G29390 454 / 5e-164 Arabidopsis thaliana sterol 4-alpha-methyl-oxidase 2-2, sterol 4-alpha-methyl-oxidase 2-2 (.1.2.3.4.5) Lus10001556 [exp] 177 / 6e-54 AT1G07420 458 / 3e-165 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2) Lus10004988 [exp] 108 / 9e-29 AT1G07420 206 / 5e-68 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G116500 [exp] 295 / 1e-99 AT4G12110 439 / 1e-156 sterol-4alpha-methyl oxidase 1-1 (.1) Potri.003G116000 [exp] 290 / 9e-98 AT4G12110 448 / 3e-160 sterol-4alpha-methyl oxidase 1-1 (.1) Potri.014G069500 [exp] 258 / 2e-85 AT4G12110 403 / 2e-142 sterol-4alpha-methyl oxidase 1-1 (.1) Potri.009G037400 [exp] 176 / 7e-54 AT1G07420 470 / 5e-170 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2) Potri.001G245300 [exp] 175 / 2e-53 AT1G07420 476 / 2e-172 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2) Potri.002G061400 [exp] 50 / 6e-07 AT1G69640 311 / 1e-107 sphingoid base hydroxylase 1 (.1) Potri.005G200000 [exp] 44 / 8e-05 AT1G69640 315 / 7e-109 sphingoid base hydroxylase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04116 [flax] [poplar] FA_hydroxylase Fatty acid hydroxylase superfamily
Representative CDS sequence Show only first row Show all	>Lus10028908 pacid=23177185 polypeptide=Lus10028908 locus=Lus10028908.g ID=Lus10028908.BGIv1.0 annot-version=v1.0 ATGGTCGGAATTCGTACCGGTCTGCCTCTGCCGTCGGGATGGGAGATTCTGTCACAATTGCTGGTTTACTTCATGATTGAGGATTATACGAATTACTGGA TCCATAGGCTGCTTCATTGTAACTGGGGGTACGAGAACATTCACAAGGTTCATCACGAATACGTAGCTCCGATTGCGTTTGCTGCAACGTATGCTCACTG GGCTGAGATTCTGATCCTCGGCATCCCGACTTTCTTGGGTCCGGCTACGGTTCCTGGACACATTATCACATTTTGGCTGTGGATCTCTCTCAGGCAGATG GAAGCCATTGAAACCCACAGCGGATATGACTTTCCTTGGAGTCTTAACAAATACATCCCATTCTATGGTGGAGCGGAGTACCACGATTACCATCACTACG TTGGAGGGCAAAGCCAGAGCAATTTCGCATCGGTCTTCACCTACTGTGATTACATCTATGGAACTGACAAGATGGTTGGAATTCGGGCAGACCTAAAGTT GCCGACACGATGGGAAATTGCGGCGCAGATTCTCGTATACTTCATCGTCGAGAATTACGTGAGCTACTGGATACACATGGGTCTTCATTGTAGATGGTTA TACAAGAAGGTTCATGAGGTTCATCACGAATGCACTGCTCCGGTTGCGATTGATGCGGTGTACGGTCACTGGATTGATACGATGGTGCTCGGACTCCCTT CTTTTGTGGGGCCGGAACACGTGGTAACCCTTTGGTTGTGGTTTTCTGCACGCCAGCTGGAGGCACTCGGAACCCACTGCGGAAAGATCATTAAATTAAT AGTTGACCGAGTCTTGACTGGAAAACAACCAGAATTCTTCGAGGGATATCCTTCCAAGTTGAGCCTAGAGAACTAA
AA sequence Show only first row Show all	>Lus10028908 pacid=23177185 polypeptide=Lus10028908 locus=Lus10028908.g ID=Lus10028908.BGIv1.0 annot-version=v1.0 MVGIRTGLPLPSGWEILSQLLVYFMIEDYTNYWIHRLLHCNWGYENIHKVHHEYVAPIAFAATYAHWAEILILGIPTFLGPATVPGHIITFWLWISLRQM EAIETHSGYDFPWSLNKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYIYGTDKMVGIRADLKLPTRWEIAAQILVYFIVENYVSYWIHMGLHCRWL YKKVHEVHHECTAPVAIDAVYGHWIDTMVLGLPSFVGPEHVVTLWLWFSARQLEALGTHCGKIIKLIVDRVLTGKQPEFFEGYPSKLSLEN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G22756		ATSMO1-2, ATSMO...	sterol C4-methyl oxidase 1-2 (...		Lus10028908 [exp]	0	1
					Lus10022996 [exp]	4.5	1.0000
					Lus10003843 [exp]	4.5	1.0000
					Lus10001326 [exp]	4.7	1.0000
					Lus10033811 [exp]	6.9	1.0000
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Lus10013823 [exp]	6.9	1.0000
AT5G35750		AHK2	histidine kinase 2 (.1)		Lus10009736 [exp]	7.5	1.0000
					Lus10026755 [exp]	10.5	1.0000
					Lus10017783 [exp]	10.8	1.0000
					Lus10014857 [exp]	10.9	1.0000
AT2G47940		EMB3117, DEGP2	EMBRYO DEFECTIVE 3117, DEGP pr...		Lus10040905 [exp]	10.9	1.0000

Compare expression of checked genes

Lus10028908 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.