Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62750 1326 / 0 ATSCO1, ATSCO1/CPEF-G SNOWY COTYLEDON 1, Translation elongation factor EFG/EF2 protein (.1) AT2G45030 585 / 0 Translation elongation factor EFG/EF2 protein (.1) AT1G45332 585 / 0 Translation elongation factor EFG/EF2 protein (.1) AT1G56070 160 / 2e-40 LOS1, AT1G56075.1 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) AT3G12915 127 / 3e-30 Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) AT2G31060 106 / 1e-23 EMB2785 EMBRYO DEFECTIVE 2785, elongation factor family protein (.1.2.3) AT5G13650 102 / 4e-22 SVR3 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2) AT3G22980 97 / 1e-20 Ribosomal protein S5/Elongation factor G/III/V family protein (.1) AT5G39900 91 / 1e-18 Small GTP-binding protein (.1) AT5G08650 87 / 1e-17 Small GTP-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004326 [exp] 1545 / 0 AT1G62750 1332 / 0.0 SNOWY COTYLEDON 1, Translation elongation factor EFG/EF2 protein (.1) Lus10018604 [exp] 590 / 0 AT2G45030 1343 / 0.0 Translation elongation factor EFG/EF2 protein (.1) Lus10039840 [exp] 565 / 0 AT2G45030 1289 / 0.0 Translation elongation factor EFG/EF2 protein (.1) Lus10031186 [exp] 103 / 4e-23 AT1G56070 902 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Lus10007535 [exp] 100 / 1e-21 AT5G13650 1121 / 0.0 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2) Lus10039896 [exp] 99 / 3e-21 AT2G31060 976 / 0.0 EMBRYO DEFECTIVE 2785, elongation factor family protein (.1.2.3) Lus10002179 [exp] 99 / 4e-21 AT2G31060 1036 / 0.0 EMBRYO DEFECTIVE 2785, elongation factor family protein (.1.2.3) Lus10004749 [exp] 98 / 1e-20 AT3G22980 1376 / 0.0 Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Lus10031185 [exp] 92 / 3e-20 AT1G56070 504 / 6e-175 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G113500 [exp] 1348 / 0 AT1G62750 1310 / 0.0 SNOWY COTYLEDON 1, Translation elongation factor EFG/EF2 protein (.1) Potri.001G123600 [exp] 590 / 0 AT1G45332 1337 / 0.0 Translation elongation factor EFG/EF2 protein (.1) Potri.003G109900 [exp] 583 / 0 AT1G45332 1330 / 0.0 Translation elongation factor EFG/EF2 protein (.1) Potri.013G123700 [exp] 104 / 6e-23 AT2G31060 1084 / 0.0 EMBRYO DEFECTIVE 2785, elongation factor family protein (.1.2.3) Potri.006G053000 [exp] 100 / 2e-21 AT5G13650 1123 / 0.0 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2) Potri.007G065700 [exp] 99 / 4e-21 AT1G56070 1623 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Potri.007G065600 [exp] 99 / 4e-21 AT1G56070 1620 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Potri.005G098100 [exp] 99 / 4e-21 AT1G56070 1648 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Potri.009G152500 [exp] 97 / 2e-20 AT3G22980 1521 / 0.0 Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Potri.018G114900 [exp] 92 / 6e-19 AT1G06220 1710 / 0.0 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0575 [flax] [poplar] EFTPs PF03144 [flax] [poplar] GTP_EFTU_D2 Elongation factor Tu domain 2 CL0437 [flax] [poplar] EF-G_C PF00679 [flax] [poplar] EFG_C Elongation factor G C-terminus CL0329 [flax] [poplar] S5 PF03764 [flax] [poplar] EFG_IV Elongation factor G, domain IV CL0023 [flax] [poplar] P-loop_NTPase PF00009 [flax] [poplar] GTP_EFTU Elongation factor Tu GTP binding domain
Representative CDS sequence Show only first row Show all	>Lus10028909 pacid=23177152 polypeptide=Lus10028909 locus=Lus10028909.g ID=Lus10028909.BGIv1.0 annot-version=v1.0 ATGGCGGCGGAGACAGTTCGACTGACGGTCTCAACTTCTTCTTCACTCAGCTCCTTCCATGGCTGTCAGCGGAAATCGAAATCCCTGTCCTCTCCAGTTC GGTTTCAGGGTCTCCCTCGACCTTCAATTACCTCCCTCACTAACTTTCTCGGAACCCATCGCGTCGCCGCCAATTTCTCCGTTCCACGCCATTCCCTGCA GAGAAAGCGGAGTAACTTCTCCGTCTTCGCCATGGCTGCCGAAGATGGCAACCGTGTTGTGCCACTGAAGGACTACCGGAACATCGGAATCATGGCTCAC ATTGACGCAGGGAAGACTACCACAACCGAGAGGGTACTCTTCTACACAGGCAGAAACTACAAAATTGGCGAAGTCCACGAAGGAACAGCTACTATGGATT GGATGGAACAGGAGCAAGAAAGAGGGATCACCATTACTTCAGCTGCCACCACCACCTTCTGGAACAAGCATCGTATCAACATCATCGACACGCCTGGCCA TGTGGACTTCACCCTTGAGGTGGAACGTGCTCTCCGAGTTTTGGACGGTGCGATCTGCTTGTTCGACAGTGTTGCTGGTGTGGAGCCACAATCGGAGATG TTGTGGAGGCAGGCGGATAAATACGGGGTTCCCAGAATTTGCTTTGTCAATAAGATGGATAGGCTCGGAGCGAACTTTTTCCGGACTAGAGACATGATCA TAACTAACTTGGGTGCTAAACCTCTTGTTATTCAAGTTCCTATTGGTTCCGAAGATAACTTTAAAGGTGTGGTTGATCTAGTGAGGATGAAGGCTATTGT TTGGTCAGGAGAAGAATTGGGTGCCAAGTTTGCGTACGAAGACATTCCGACTGATCTTGAAGAATTGGCTCAGGATTACCGAGCACAGATGATAGAGACC ATTGTCGATTTGGACGATGAAGCTATGGAAAACTATCTAGAAGGAATAGAGCCTGATGAGGAAGCCATAAAGAAACTTATCCGGAAAGGAACTATCGGAG GCAACTTTGTACCGGTGTTGTGTGGCTCAGCTTTCAAAAACAAAGGAGTGCAACCATTGCTTGATGCAGTTGTTGACTATCTCCCTTCCCCGATCGAGGT TCCTCCGATGAAAGGGACCGATCCTGAGAACCCTGAAATCACGATCGAAAGGTCCCCCAGCGACAACGAACCATTTTCCGGCCTAGCATTTAAGATCATG AACGATCCATTTGTCGGTTCCCTTACATTCGTAAGAGTGTATTCAGGAAAACTCGCAGCTGGATCTTATGTCTTGAATGCAAACAAGGGGAAGAAAGAGA GAATTGGCAGGCTTCTCGAGATGCATGCAAATAGTAGAGAGGATGTTAAGGTGGCCGTAACGGGAGATATTGTTGCTCTTGCAGGACTGAAGGACACCAT AACGGGCGAAACTTTGTGCGATGTGGATAATACGGTTGTGCTTGAACGGATGGATTTCCCCGATCCTGTCATCAAAGTTGCAATTGAACCAAAAACCAAG GCTGATATTGACAAGATGGCTACAGGGTTGATCAAGCTTGCGCAGGAAGATCCTTCTTTCCACTTTTCGCGTGACGACGAAACCAACCAGACTGTGATTG AAGGAATGGGAGAGTTGCATCTTGAGATCATCGTAGACCGTCTGAAAAGAGAATTCAAGGTGGAAGCCAATGTTGGTGCACCACAAGTGAACTACCGTGA GAGCATTAGCAGAATAGCAGAAGTGAAGTATGTGCACAAGAAGCAATCAGGTGGGCAAGGACAGTTTGCTGACATAACCGTACGATTCGAGCCCATGGAG GCCGGTTCAGGGTACGAGTTCAAGAGCGAGATCAAGGGAGGAACAGTGCCTAGGGAATACATTCCCGGAGTGATGAAAGGACTTGAAGAATGCATGAGCA ACGGAGTTTTGGCCGGTTTCCCCGTGGTTGATGTCCGTGCTGTGTTGGTTGATGGTTCCTACCACGATGTCGATTCAAGTGTGCTGGCCTTCCAACTTGC CGCTAGAGGAGCCTTCAGAGAAGGGATTAGGAAAGCCGCTCCTAAGATGCTGGAACCGATAATGAAGGTTGAAGTTGTGACTCCAGAGGAACACCTGGGG GATGTGATTGGTGATCTCAACTCCAGGAGAGGTCAGATTAATACCTTTACAGACAAACCTGGTGGCCTCAAGGTGGTGGATGCGCTTGTGCCATTGGCGG AGATGTTCCAGTACGTGAGTACTTTGAGAGGAACGACTAAAGGGAGAGCTTCGTACACGATGCAGTTGGCTAAGTTCGATGTTGTCCCTCAGCATATTCA GAACCAGCTTGCTTCTAAAGAGCAGGAAGTTGCTGCTTGA
AA sequence Show only first row Show all	>Lus10028909 pacid=23177152 polypeptide=Lus10028909 locus=Lus10028909.g ID=Lus10028909.BGIv1.0 annot-version=v1.0 MAAETVRLTVSTSSSLSSFHGCQRKSKSLSSPVRFQGLPRPSITSLTNFLGTHRVAANFSVPRHSLQRKRSNFSVFAMAAEDGNRVVPLKDYRNIGIMAH IDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTFWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSEM LWRQADKYGVPRICFVNKMDRLGANFFRTRDMIITNLGAKPLVIQVPIGSEDNFKGVVDLVRMKAIVWSGEELGAKFAYEDIPTDLEELAQDYRAQMIET IVDLDDEAMENYLEGIEPDEEAIKKLIRKGTIGGNFVPVLCGSAFKNKGVQPLLDAVVDYLPSPIEVPPMKGTDPENPEITIERSPSDNEPFSGLAFKIM NDPFVGSLTFVRVYSGKLAAGSYVLNANKGKKERIGRLLEMHANSREDVKVAVTGDIVALAGLKDTITGETLCDVDNTVVLERMDFPDPVIKVAIEPKTK ADIDKMATGLIKLAQEDPSFHFSRDDETNQTVIEGMGELHLEIIVDRLKREFKVEANVGAPQVNYRESISRIAEVKYVHKKQSGGQGQFADITVRFEPME AGSGYEFKSEIKGGTVPREYIPGVMKGLEECMSNGVLAGFPVVDVRAVLVDGSYHDVDSSVLAFQLAARGAFREGIRKAAPKMLEPIMKVEVVTPEEHLG DVIGDLNSRRGQINTFTDKPGGLKVVDALVPLAEMFQYVSTLRGTTKGRASYTMQLAKFDVVPQHIQNQLASKEQEVAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G62750		ATSCO1, ATSCO1/...	SNOWY COTYLEDON 1, Translation...		Lus10028909 [exp]	0	1
AT4G27600		NARA5	GENES NECESSARY FOR THE ACHIE...		Lus10026867 [exp]	1.7	0.9452
AT3G25410			Sodium Bile acid symporter fam...		Lus10038237 [exp]	2.4	0.9329
AT3G25410			Sodium Bile acid symporter fam...		Lus10025862 [exp]	3.9	0.9171
AT4G02790		EMB3129	EMBRYO DEFECTIVE 3129, GTP-bin...		Lus10014672 [exp]	4.2	0.9325
AT2G35410			RNA-binding (RRM/RBD/RNP motif...		Lus10037265 [exp]	6.0	0.9185
AT4G37380			Tetratricopeptide repeat (TPR)...		Lus10010385 [exp]	9.8	0.9165
AT2G20890		PSB29, THF1	THYLAKOID FORMATION1, photosys...		Lus10018528 [exp]	11.8	0.9161
AT3G01550		ATPPT2	phosphoenolpyruvate (pep)/phos...		Lus10022257 [exp]	12.4	0.8825
AT5G08740		NDC1	NAD(P)H dehydrogenase C1 (.1)		Lus10032131 [exp]	13.0	0.8883
AT5G19220		ADG2, APL1	ADP GLUCOSE PYROPHOSPHORYLASE ...		Lus10010515 [exp]	13.6	0.9087

Compare expression of checked genes

Lus10028909 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.