Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62760 166 / 1e-50 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT4G25260 145 / 8e-44 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT5G62360 134 / 3e-39 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT3G47380 125 / 9e-36 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT5G62350 125 / 1e-35 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT1G14890 124 / 4e-35 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT5G51520 119 / 2e-33 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT2G01610 117 / 1e-32 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT4G25250 115 / 4e-32 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT1G62770 114 / 3e-31 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004327 [exp] 379 / 1e-135 AT1G62760 164 / 8e-50 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10032232 [exp] 200 / 6e-65 AT1G62760 141 / 9e-41 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10024595 [exp] 193 / 4e-62 AT1G62760 141 / 6e-41 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10038915 [exp] 150 / 1e-45 AT5G62360 174 / 5e-55 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10031138 [exp] 137 / 1e-40 AT5G62360 172 / 3e-54 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10027199 [exp] 137 / 2e-40 AT5G62360 169 / 3e-53 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10031711 [exp] 129 / 3e-37 AT5G62360 145 / 4e-44 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10031133 [exp] 125 / 9e-36 AT5G62350 211 / 8e-70 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10031713 [exp] 125 / 9e-36 AT5G62350 202 / 4e-66 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G113600 [exp] 181 / 9e-58 AT1G62760 171 / 1e-52 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.001G119300 [exp] 181 / 1e-57 AT1G62760 167 / 3e-51 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.015G128100 [exp] 154 / 6e-47 AT5G62360 221 / 1e-73 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.015G128300 [exp] 148 / 8e-45 AT5G62360 192 / 1e-62 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.015G128200 [exp] 148 / 9e-45 AT5G62360 172 / 1e-54 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.012G127400 [exp] 132 / 2e-38 AT4G25250 150 / 7e-46 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.015G128700 [exp] 131 / 4e-38 AT5G62350 221 / 7e-74 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.012G127500 [exp] 128 / 6e-37 AT5G62350 220 / 2e-73 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.003G113700 [exp] 124 / 1e-35 AT4G12390 178 / 1e-56 pectin methylesterase inhibitor 1 (.1) Potri.010G109300 [exp] 124 / 3e-35 AT1G14890 218 / 5e-72 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10028910 pacid=23177151 polypeptide=Lus10028910 locus=Lus10028910.g ID=Lus10028910.BGIv1.0 annot-version=v1.0 ATGAGAACGTCGGCAGCAATTTTCTTTCTCTTCTTCCTTACCAAGGTAATCATTACTCCAACCGCCGCAAACCCATCGCCGGAATCGTCCACAAGGTTAA ACCCAGACGCGGAATTCATCAAAACTTCTTGCAATTCAACCCTCTACCCTAAACGCTGCTACATAACCCTGTCCCCTTACGCCTCCGAAATCGGATCCGA CCCGAGGAAACTGTCTTTGAAAGCTCTCAACGTGACCTTAAAAGTCACGAAATCCGCTTCCAGGCTAATGAAGAGGATGTCCAGAATGAAAGGCTTGCAG CCCCGGATGGCTGCGGCGGTGGCGGACTGCGTGGAGGAGGTCGGAGACGCTGTGGAGGAGCTGGGGAACTCGGTCGCCGAGATGGGCGGGTCGCCCAGTC AGGGACCCGACTTCTGCCGGGTTATTTCCGATGTTCAGACTTGGGTCAGCGCAGCGGAGACCGACGATGACACCTGTACGGACGGGTTCGACGAGGAGCA GGCGGCGGAGGAGGAAAAGAGTTCGGCGGTGGTGAGTAGAAATGTGAAGAAGATAGTTGAGAGACACGTGGCGAGGATTTCTCGGTTTACTAGTAACGCT CTGGCTTTGGTGAATCTCTATGCTTCTTCTTCCGAATCTAGTCAAGTTCCTTGTTGA
AA sequence Show only first row Show all	>Lus10028910 pacid=23177151 polypeptide=Lus10028910 locus=Lus10028910.g ID=Lus10028910.BGIv1.0 annot-version=v1.0 MRTSAAIFFLFFLTKVIITPTAANPSPESSTRLNPDAEFIKTSCNSTLYPKRCYITLSPYASEIGSDPRKLSLKALNVTLKVTKSASRLMKRMSRMKGLQ PRMAAAVADCVEEVGDAVEELGNSVAEMGGSPSQGPDFCRVISDVQTWVSAAETDDDTCTDGFDEEQAAEEEKSSAVVSRNVKKIVERHVARISRFTSNA LALVNLYASSSESSQVPC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G62760			Plant invertase/pectin methyle...		Lus10028910 [exp]	0	1
AT5G17980			C2 calcium/lipid-binding plant...		Lus10010658 [exp]	6.2	0.8118
AT5G01880			RING/U-box superfamily protein...		Lus10025228 [exp]	6.9	0.7779
					Lus10015658 [exp]	9.5	0.8013
AT5G47740			Adenine nucleotide alpha hydro...		Lus10019487 [exp]	10.6	0.7746
					Lus10003607 [exp]	10.6	0.7876
AT5G47740			Adenine nucleotide alpha hydro...		Lus10043338 [exp]	11.5	0.7795
AT2G27035		AtENODL20	early nodulin-like protein 20 ...		Lus10005229 [exp]	14.4	0.8010
AT1G70280			NHL domain-containing protein ...		Lus10032158 [exp]	15.7	0.7929
AT5G66440			unknown protein		Lus10023551 [exp]	18.0	0.7928
AT1G46264	HSF	SCZ, AT-HSFB4	SCHIZORIZA, heat shock transcr...		Lus10001133 [exp]	20.0	0.7891

Compare expression of checked genes

Lus10028910 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.