Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48620 69 / 3e-12 HON5 high mobility group A5 (.1) AT3G18035 68 / 6e-12 HON4 winged-helix DNA-binding transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004328 [exp] 629 / 0 AT3G18035 129 / 2e-32 winged-helix DNA-binding transcription factor family protein (.1) Lus10024594 [exp] 194 / 2e-55 AT3G18035 132 / 3e-33 winged-helix DNA-binding transcription factor family protein (.1) Lus10032231 [exp] 157 / 6e-42 AT1G48620 103 / 2e-23 high mobility group A5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G048500 [exp] 67 / 1e-11 AT1G14900 66 / 5e-12 high mobility group A (.1) Potri.015G040200 [exp] 66 / 3e-11 AT1G48620 99 / 6e-22 high mobility group A5 (.1) Potri.008G162300 [exp] 42 / 0.0003 AT2G30620 76 / 2e-17 winged-helix DNA-binding transcription factor family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00538 [flax] [poplar] Linker_histone linker histone H1 and H5 family
Representative CDS sequence Show only first row Show all	>Lus10028911 pacid=23177222 polypeptide=Lus10028911 locus=Lus10028911.g ID=Lus10028911.BGIv1.0 annot-version=v1.0 ATGGATCAGTATCACACCTCTATACCGCAGTGGGCCCATCAACAGCCTCCCCTCACCGCCGCTCCTTACTCCGTCGCCGCCTTTCCATCTGTCACGGCGG CTGCTCCTCCTCCACCTAACCTTAACTATGCATCTCAACATCAACTTCCCAACTTCGCCGCAGCTGTACCGACCCCGCCGCCGCGGCCAACTGATGCTTC TCCAGCTCAAGCTCCGGCAGTCATTCAACAGCCACCTGGGTTCAACTCCGGCGACCCTATCCCGTCATATGCACAGATGATCATCTCTGCGATTGCGGCT TTGAAAGAACCCGACGGCTCAAGCAAAAGAGCGATAACCAAGTACATCGACCATTTTTATCCTGGGCTTCTTCCTCCCGCACTGTTGACCCAGACCTTGC AGCAATTGAAGACAAATGGAATGCTTGTCATGGTAAAGAAATCGTACAAGCTCCCTGGGTCGGATTTCACTTACAACGTCAACGACCTTCCAGATCTGTC CGCCGATGTTCCCCACGATGCTTCGGTTCAGCCACTGGAACAACCGCCGCAGACCTCTGAAGTAGGAGCAGCAGAAGCGATAGTTTCTTCTTCTGTTGCG TCTAAAAGAGGCCGTGGAAGGCCTCCAAAGCCTAAGCTTGATTCTGTACTCTCCAACGGCCACCAACCACAACCCCAATCCGTCGTGGTCTCTCAGCCAG AGGCTGATAACACTCTGCCGCCTGGTTTTGCTCCAAATGGCCAGCCGACCAGTAATGACTCATCCTTACCCATTGTGGTGGACTTTAATGCTGACGTCGG AGCTCAGGCGGTTAATGTGCCAATTGGGGTGGCGGAGGAGACTAATGTTGGCAAGAGAAGGCCAGGGAGGCCTCCGAAGAAGTTGTTGGGCATTGAAAAC GGCGGGATTGTGATTGGTAAGAGGGGAAGAGGGAGGCCTCCAATGAGTGGGTTGAAGAAGAGAAGTCCTGGAAGGCCCAGGAAGCCTAAGCCTAAGACCG TGGCGGGTGTTTCCGGAGCGAATGGGCACAAGAGGCGCCCTGGCCGACCACCCAAGAATAACCAGGCGATTTCGGTGATGGTCCCTTATGATACGACTGG GGAAGCAATTCCACAAGAGAGTTCGCCGAGGCCTAGGGGGCGCCCAAGGAAGGGTACTGGATCAATTGCTGCTGATGTAGGCGTTGTTTTAGGGCTCTCT GATAAGCTGTCAGGACTCACCCGGAATGTGGGTGATGGTGGCATCAAGCCTAGGAGGTCTGGGAGGCCAGTTGGCCGTCCAAGGAAGTATGCTGATGAAT CAGAAACTGAGTCTAACACAGAGAAAGATTTTAGGGAGAAACTCCAGTATCTTCAACAGCAGGTAAGGGCAATAGTTGCTGTGCTGAAGCCGGAGCTGCC CAATGGAGCTCCAGAAACTGTAGTAGCGGCAGTTGGGGAACTGGAAATCCTGGCAGAACTTGACATCAACAAGCCAGTCCCAGCATCAACACTCAGAGCA GTCACCGCTCCAGGCAGTTGA
AA sequence Show only first row Show all	>Lus10028911 pacid=23177222 polypeptide=Lus10028911 locus=Lus10028911.g ID=Lus10028911.BGIv1.0 annot-version=v1.0 MDQYHTSIPQWAHQQPPLTAAPYSVAAFPSVTAAAPPPPNLNYASQHQLPNFAAAVPTPPPRPTDASPAQAPAVIQQPPGFNSGDPIPSYAQMIISAIAA LKEPDGSSKRAITKYIDHFYPGLLPPALLTQTLQQLKTNGMLVMVKKSYKLPGSDFTYNVNDLPDLSADVPHDASVQPLEQPPQTSEVGAAEAIVSSSVA SKRGRGRPPKPKLDSVLSNGHQPQPQSVVVSQPEADNTLPPGFAPNGQPTSNDSSLPIVVDFNADVGAQAVNVPIGVAEETNVGKRRPGRPPKKLLGIEN GGIVIGKRGRGRPPMSGLKKRSPGRPRKPKPKTVAGVSGANGHKRRPGRPPKNNQAISVMVPYDTTGEAIPQESSPRPRGRPRKGTGSIAADVGVVLGLS DKLSGLTRNVGDGGIKPRRSGRPVGRPRKYADESETESNTEKDFREKLQYLQQQVRAIVAVLKPELPNGAPETVVAAVGELEILAELDINKPVPASTLRA VTAPGS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G48620		HON5	high mobility group A5 (.1)		Lus10028911 [exp]	0	1
AT3G18035		HON4	winged-helix DNA-binding trans...		Lus10004328 [exp]	1.0	0.9516
AT3G12210			DNA binding (.1.2)		Lus10018653 [exp]	2.0	0.9172
AT3G52110			unknown protein		Lus10029522 [exp]	6.3	0.8971
AT5G48820		ICK6, KRP3	KIP-RELATED PROTEIN 3, inhibit...		Lus10011862 [exp]	6.6	0.8980
AT2G03050		SOLDAT10, EMB93	SINGLET OXYGEN-LINKED DEATH AC...		Lus10026612 [exp]	7.5	0.8872
AT3G53940			Mitochondrial substrate carrie...		Lus10021497 [exp]	8.5	0.8784
AT5G25590			Protein of unknown function (D...		Lus10037902 [exp]	12.5	0.9086
AT3G22520			unknown protein		Lus10041202 [exp]	16.5	0.8880
AT1G22260		AtZYP1a, ZYP1a	Myosin heavy chain-related pro...		Lus10036517 [exp]	18.0	0.8862
AT1G75310		AUL1	auxilin-like 1, auxin-like 1 p...		Lus10010642 [exp]	19.1	0.8896

Compare expression of checked genes

Lus10028911 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.