Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64950 249 / 2e-79 Mitochondrial transcription termination factor family protein (.1) AT1G21150 149 / 6e-41 Mitochondrial transcription termination factor family protein (.1) AT5G07900 147 / 3e-40 Mitochondrial transcription termination factor family protein (.1) AT1G62120 102 / 8e-24 Mitochondrial transcription termination factor family protein (.1) AT1G62010 99 / 9e-23 Mitochondrial transcription termination factor family protein (.1) AT1G61990 97 / 6e-22 Mitochondrial transcription termination factor family protein (.1) AT1G61970 96 / 9e-22 Mitochondrial transcription termination factor family protein (.1.2) AT1G61980 96 / 2e-21 Mitochondrial transcription termination factor family protein (.1) AT3G46950 86 / 3e-18 Mitochondrial transcription termination factor family protein (.1) AT1G62150 84 / 1e-17 Mitochondrial transcription termination factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004329 [exp] 671 / 0 AT5G64950 238 / 2e-75 Mitochondrial transcription termination factor family protein (.1) Lus10029199 [exp] 492 / 5e-175 AT5G64950 226 / 1e-70 Mitochondrial transcription termination factor family protein (.1) Lus10010714 [exp] 175 / 2e-52 AT4G38840 117 / 3e-33 SAUR-like auxin-responsive protein family (.1) Lus10008688 [exp] 167 / 5e-48 AT5G07900 197 / 2e-59 Mitochondrial transcription termination factor family protein (.1) Lus10040820 [exp] 141 / 5e-38 AT5G07900 221 / 2e-68 Mitochondrial transcription termination factor family protein (.1) Lus10040817 [exp] 130 / 2e-34 AT5G07900 225 / 6e-70 Mitochondrial transcription termination factor family protein (.1) Lus10036450 [exp] 129 / 1e-33 AT5G07900 176 / 3e-51 Mitochondrial transcription termination factor family protein (.1) Lus10016550 [exp] 124 / 5e-32 AT5G07900 219 / 9e-68 Mitochondrial transcription termination factor family protein (.1) Lus10041122 [exp] 118 / 8e-30 AT5G07900 166 / 2e-47 Mitochondrial transcription termination factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G190300 [exp] 165 / 2e-47 AT5G07900 209 / 8e-64 Mitochondrial transcription termination factor family protein (.1) Potri.001G034933 [exp] 164 / 7e-47 AT5G07900 194 / 3e-58 Mitochondrial transcription termination factor family protein (.1) Potri.004G222000 [exp] 162 / 2e-46 AT5G07900 200 / 1e-60 Mitochondrial transcription termination factor family protein (.1) Potri.003G190400 [exp] 160 / 1e-45 AT5G07900 206 / 9e-63 Mitochondrial transcription termination factor family protein (.1) Potri.001G034700 [exp] 159 / 3e-45 AT5G07900 202 / 2e-61 Mitochondrial transcription termination factor family protein (.1) Potri.001G029400 [exp] 157 / 5e-44 AT5G07900 181 / 4e-53 Mitochondrial transcription termination factor family protein (.1) Potri.014G133200 [exp] 157 / 5e-44 AT5G07900 436 / 3e-152 Mitochondrial transcription termination factor family protein (.1) Potri.001G030300 [exp] 155 / 1e-43 AT5G07900 190 / 2e-56 Mitochondrial transcription termination factor family protein (.1) Potri.001G035200 [exp] 154 / 2e-43 AT5G07900 168 / 3e-48 Mitochondrial transcription termination factor family protein (.1) Potri.003G190700 [exp] 153 / 7e-43 AT5G07900 213 / 3e-65 Mitochondrial transcription termination factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02536 [flax] [poplar] mTERF mTERF
Representative CDS sequence Show only first row Show all	>Lus10028912 pacid=23177342 polypeptide=Lus10028912 locus=Lus10028912.g ID=Lus10028912.BGIv1.0 annot-version=v1.0 ATGCTCTCTCTCTCAACTTACCGTCACAGCAATCTACGATTCGGAGCTTGCTTCGTTGCCTGCTTCTCTAAACTCGCCGAGTCCCCCTCAGCTGCATCAA GCTCCTCTGCCCTAGTGGATTGCTTGATTGCAACCTTCAAATTTACCGACACCCAAGCCCACTCCATCGCCTCTCGCTTCCCCACTTTCAAATCTGCTAA AAAACCCCAAGCCTTGTCCCAATTCCTTCGAGATCAGGGTTTCACCGATGCCCATATACAAGCTACAGTCTCCGGAGCACCTCAGATACTATTTGCCAAC ATTGACAGGAATCTTAAACCCAAGATCCAGCATTTTCGTAAACTGGGCCTTGAGGGTTCTCGTCTGTGTAAATTCCTCTCGAAAAATCCCACGATTTTGA CTGCTAGTTTGAAGGAGAAGTTGGGTCCTCGACTTGAAATTTTGCAGAAATCCGTCTCTCAGAAAGATTTAGCTAGGGGTGTAGAAAGGTGCAGTTGGGT TCTGTTTAAGTACTCGGAATCGAGACTGTTGTCGAACATTGCATTGCTGCAGAGCTGTGGCATTGTCGGGTCTCAGCTCTCGATGCTGTTCAGAATGCAG CCCAGGATTTTCTTGAGGGAAGAATCTGAACTTAGAGGCATTGTTTCCAGGACTTTGGATTTCGGGTTCTCGACGAAATCTAAGATGTTTGTACACGGTT TGTACACCGTCAGCGGATGGAGTGACGCTGCCCTCGAAAGAAAATTCGCAATCTTCGACGGGTATGGATTTTCGAGGGAAGAATGTATCGGCATGTTCAG AAAGGCACCAGTATTGCTGAGGTGCTCCGAGGAGAAGTTGAAGTTTGGGATTGATTTCTATTTGAACACAATGAAGCTGAGCAAAGAGATGATATGTAGC AGGCCTTCGCTGTTGATGTACAGCATGACGGAAAGAGTAATTCCTCGATACCGTGTTTTGGAGATGATGGAGTCGAAGGCGCTGTTTGAAAAGAGGCCGA ACTTCAGCACTGTTGCGAGTCTGACGAATGAGAGGTTTATCGACAAGTTCGTGTTTTGGTCGTTAGATCATGCAGAGGAACTACTAATGGCTTACAATGG TCATGATGTCAGTGCTGCTAGAGATGAAACATGTTTGTAG
AA sequence Show only first row Show all	>Lus10028912 pacid=23177342 polypeptide=Lus10028912 locus=Lus10028912.g ID=Lus10028912.BGIv1.0 annot-version=v1.0 MLSLSTYRHSNLRFGACFVACFSKLAESPSAASSSSALVDCLIATFKFTDTQAHSIASRFPTFKSAKKPQALSQFLRDQGFTDAHIQATVSGAPQILFAN IDRNLKPKIQHFRKLGLEGSRLCKFLSKNPTILTASLKEKLGPRLEILQKSVSQKDLARGVERCSWVLFKYSESRLLSNIALLQSCGIVGSQLSMLFRMQ PRIFLREESELRGIVSRTLDFGFSTKSKMFVHGLYTVSGWSDAALERKFAIFDGYGFSREECIGMFRKAPVLLRCSEEKLKFGIDFYLNTMKLSKEMICS RPSLLMYSMTERVIPRYRVLEMMESKALFEKRPNFSTVASLTNERFIDKFVFWSLDHAEELLMAYNGHDVSAARDETCL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64950			Mitochondrial transcription te...		Lus10028912 [exp]	0	1
AT5G06770	C3HZnF		KH domain-containing protein /...		Lus10021043 [exp]	5.8	0.8274
AT5G64950			Mitochondrial transcription te...		Lus10004329 [exp]	9.1	0.8277
AT4G14700		ORC1, ATORC1A, ...	origin recognition complex 1 (...		Lus10031279 [exp]	10.2	0.8245
AT5G16860			Tetratricopeptide repeat (TPR)...		Lus10020652 [exp]	21.1	0.7351
AT3G57610		ADSS, ATPURA	adenylosuccinate synthase (.1)		Lus10040512 [exp]	28.0	0.8247
AT5G58230		MSI1, MEE70, AT...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10020917 [exp]	28.5	0.8025
AT5G04520			Protein of unknown function DU...		Lus10028831 [exp]	29.3	0.8259
AT1G25360			Pentatricopeptide repeat (PPR)...		Lus10028106 [exp]	30.0	0.7927
AT3G02330			Pentatricopeptide repeat (PPR)...		Lus10014594 [exp]	31.4	0.7917
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Lus10013652 [exp]	36.7	0.7064

Compare expression of checked genes

Lus10028912 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.