Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24620 179 / 3e-58 EF hand calcium-binding protein family (.1) AT5G37770 110 / 4e-31 CML24, TCH2 TOUCH 2, CALMODULIN-LIKE 24, EF hand calcium-binding protein family (.1) AT1G66400 107 / 5e-30 CML23 calmodulin like 23 (.1) AT1G73630 100 / 2e-27 EF hand calcium-binding protein family (.1) AT1G18210 99 / 1e-26 Calcium-binding EF-hand family protein (.1.2) AT3G22930 87 / 4e-22 CML11 calmodulin-like 11 (.1) AT1G66410 87 / 4e-22 ACAM-4, CAM4 calmodulin 4 (.1.2) AT5G37780 87 / 4e-22 ACAM-1, TCH1, CAM1 TOUCH 1, calmodulin 1 (.1.2.3) AT5G21274 87 / 4e-22 ACAM-6, CAM6 calmodulin 6 (.1) AT2G41110 86 / 7e-22 ACAM-2, ATCAL5, CAM2 calmodulin 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004330 [exp] 266 / 4e-93 AT1G24620 207 / 2e-69 EF hand calcium-binding protein family (.1) Lus10029660 [exp] 154 / 4e-49 AT1G24620 102 / 3e-28 EF hand calcium-binding protein family (.1) Lus10024574 [exp] 142 / 4e-44 AT1G24620 143 / 4e-44 EF hand calcium-binding protein family (.1) Lus10019863 [exp] 102 / 1e-27 AT2G15680 233 / 9e-79 calmodulin-like 30, Calcium-binding EF-hand family protein (.1) Lus10014050 [exp] 98 / 3e-26 AT2G15680 239 / 4e-81 calmodulin-like 30, Calcium-binding EF-hand family protein (.1) Lus10018012 [exp] 98 / 4e-26 AT1G18210 195 / 2e-64 Calcium-binding EF-hand family protein (.1.2) Lus10009127 [exp] 100 / 7e-26 AT1G66400 147 / 2e-44 calmodulin like 23 (.1) Lus10031345 [exp] 92 / 5e-24 AT1G18210 196 / 1e-64 Calcium-binding EF-hand family protein (.1.2) Lus10009059 [exp] 92 / 8e-24 AT1G18210 197 / 3e-65 Calcium-binding EF-hand family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G107100 [exp] 194 / 5e-64 AT1G24620 220 / 2e-73 EF hand calcium-binding protein family (.1) Potri.008G134300 [exp] 191 / 1e-62 AT1G24620 219 / 2e-73 EF hand calcium-binding protein family (.1) Potri.015G039500 [exp] 102 / 7e-28 AT1G18210 189 / 6e-62 Calcium-binding EF-hand family protein (.1.2) Potri.012G048200 [exp] 100 / 2e-27 AT1G18210 188 / 8e-62 Calcium-binding EF-hand family protein (.1.2) Potri.004G089400 [exp] 96 / 1e-25 AT1G66400 157 / 7e-50 calmodulin like 23 (.1) Potri.014G070700 [exp] 97 / 2e-25 AT1G18210 94 / 2e-24 Calcium-binding EF-hand family protein (.1.2) Potri.017G126200 [exp] 94 / 8e-25 AT1G66400 155 / 5e-49 calmodulin like 23 (.1) Potri.008G159300 [exp] 90 / 2e-23 AT3G22930 235 / 1e-80 calmodulin-like 11 (.1) Potri.010G080900 [exp] 90 / 2e-23 AT4G14640 270 / 2e-94 calmodulin-like 8, calmodulin 8 (.1) Potri.007G042900 [exp] 89 / 1e-22 AT2G15680 169 / 1e-53 calmodulin-like 30, Calcium-binding EF-hand family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10028913 pacid=23177163 polypeptide=Lus10028913 locus=Lus10028913.g ID=Lus10028913.BGIv1.0 annot-version=v1.0 ATGAACTGCCACGCCTCCGAGCTAGACCAGGTGTTCAAGAAATTCGACGTCAACGGCGACGGCAAGATCTCCGCCTCCGAGCTGGGCATGATCATGTCCA GCCTCGGCCACAGGGCCAACGACGACGAGCTCCAGAAAATGATCACCGAGTTCGACGCCGACGGGGACGGGTTCATCGATTTCGACGAGTTCGTGGCCAT GAACACCCAGGGTGTCGGGTCCGAGGAGGCGATGGTGAATCTGAGACACGCGTTCTCGGTCTACGACATCGACGGCAACGGGTCGATCACCGCCGAGGAG CTGCACAAGGTGATGATCAGCTTGGGGGAAGAGTGCTCGATTGCAGAGTGCAGGAAGATGATCAGCGGGGTCGATCGGGACGGCAATGGGACGATCGATT TCGACGAGTTTAAGATGATGATGACTGTCGGTTCCAGGTGGGGCTCTTCCGAGCACGATGCTGTGAAGCAGTGA
AA sequence Show only first row Show all	>Lus10028913 pacid=23177163 polypeptide=Lus10028913 locus=Lus10028913.g ID=Lus10028913.BGIv1.0 annot-version=v1.0 MNCHASELDQVFKKFDVNGDGKISASELGMIMSSLGHRANDDELQKMITEFDADGDGFIDFDEFVAMNTQGVGSEEAMVNLRHAFSVYDIDGNGSITAEE LHKVMISLGEECSIAECRKMISGVDRDGNGTIDFDEFKMMMTVGSRWGSSEHDAVKQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24620			EF hand calcium-binding protei...		Lus10028913 [exp]	0	1
AT2G36450	AP2_ERF	HRD	HARDY, Integrase-type DNA-bind...		Lus10023873 [exp]	1.0	0.9783
AT2G28790			Pathogenesis-related thaumatin...		Lus10040843 [exp]	2.0	0.9709
AT4G23610			Late embryogenesis abundant (L...		Lus10027179 [exp]	4.2	0.9673
AT2G17270		PHT3;3	phosphate transporter 3;3 (.1)		Lus10035975 [exp]	5.7	0.9628
AT4G38400		ATEXPL2, ATHEXP...	EXPANSIN L2, expansin-like A2 ...		Lus10025116 [exp]	6.9	0.9434
					Lus10041251 [exp]	7.4	0.9588
AT2G38600			HAD superfamily, subfamily III...		Lus10017060 [exp]	8.1	0.9446
AT2G37870			Bifunctional inhibitor/lipid-t...		Lus10031925 [exp]	8.9	0.9523
AT5G17390			Adenine nucleotide alpha hydro...		Lus10034661 [exp]	9.0	0.9521
AT4G23610			Late embryogenesis abundant (L...		Lus10039662 [exp]	9.5	0.9501

Compare expression of checked genes

Lus10028913 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.