Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12320 442 / 7e-151 CYP706A6 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) AT4G12300 436 / 2e-148 CYP706A4 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) AT4G12330 434 / 8e-148 CYP706A7 "cytochrome P450, family 706, subfamily A, polypeptide 7", cytochrome P450, family 706, subfamily A, polypeptide 7 (.1) AT4G12310 426 / 1e-144 CYP706A5 "cytochrome P450, family 706, subfamily A, polypeptide 5", cytochrome P450, family 706, subfamily A, polypeptide 5 (.1) AT5G44620 412 / 3e-139 CYP706A3 "cytochrome P450, family 706, subfamily A, polypeptide 3", cytochrome P450, family 706, subfamily A, polypeptide 3 (.1) AT4G22710 400 / 2e-134 CYP706A2 "cytochrome P450, family 706, subfamily A, polypeptide 2", cytochrome P450, family 706, subfamily A, polypeptide 2 (.1) AT4G22690 398 / 4e-133 CYP706A1 "cytochrome P450, family 706, subfamily A, polypeptide 1", cytochrome P450, family 706, subfamily A, polypeptide 1 (.1) AT5G07990 322 / 4e-104 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT2G45560 317 / 4e-102 CYP76C1 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) AT2G45570 303 / 8e-97 CYP76C2 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004331 [exp] 1002 / 0 AT4G12300 449 / 1e-153 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10032026 [exp] 549 / 0 AT4G12300 464 / 1e-159 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10032215 [exp] 544 / 0 AT4G12300 462 / 1e-158 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10024578 [exp] 516 / 8e-180 AT4G12320 437 / 7e-149 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Lus10032214 [exp] 510 / 1e-177 AT4G12320 433 / 2e-147 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Lus10032211 [exp] 507 / 2e-176 AT4G12320 432 / 2e-147 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Lus10024577 [exp] 497 / 1e-172 AT4G12300 444 / 3e-152 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10032213 [exp] 490 / 7e-170 AT4G12300 453 / 1e-155 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10024581 [exp] 459 / 1e-158 AT4G12300 395 / 5e-134 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G118400 [exp] 568 / 0 AT4G12300 429 / 9e-146 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Potri.003G114400 [exp] 508 / 2e-176 AT4G12320 495 / 1e-171 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Potri.001G118500 [exp] 490 / 1e-169 AT4G12320 627 / 0.0 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Potri.005G045800 [exp] 458 / 2e-156 AT4G12300 577 / 0.0 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Potri.009G069100 [exp] 340 / 2e-111 AT5G07990 512 / 1e-178 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.013G073300 [exp] 338 / 2e-110 AT5G07990 711 / 0.0 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.001G113900 [exp] 321 / 5e-104 AT2G45550 496 / 1e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.016G137600 [exp] 321 / 1e-103 AT3G48270 401 / 2e-135 "cytochrome P450, family 71, subfamily A, polypeptide 26", cytochrome P450, family 71, subfamily A, polypeptide 26 (.1) Potri.001G274600 [exp] 318 / 6e-103 AT5G07990 488 / 2e-169 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.016G049800 [exp] 314 / 4e-101 AT5G06900 536 / 0.0 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10028914 pacid=23177279 polypeptide=Lus10028914 locus=Lus10028914.g ID=Lus10028914.BGIv1.0 annot-version=v1.0 ATGGCTCTCAACATCCTCCACGACTTGCAGACATGGTACACATCACCCGCCATGGACACCGTCAAGTTCCTTGTCGCACCGATCCTTGTAGCAATCTTAA CATCATTTCTCCTGACGAAAAAGTGGACCTCGAAAGGGGCCCCTCTCCCTCCGGGTCCAACCGGGCTGCCCATTGTCGGGTACCTCCCTTTCCTAGGTGT CCACCTCCACCACGAGTTTACCAAGTTGGCAGCCACGTACGGTCCGGTCTACAAGATGTGGCTGGGGACCAAGCTCTGCGTGGTGGTCAGCTCTCCTTCC TTGGTCAAGGAAGTGGTGAGAGATCAGGACAGCGTGTTTGCCAACCGGGACCCGCCCATTGCCTCCGTGGTGCTGACCTACGGATGTGATGACGTGGCGT TCTCGAACTACGGCCCCTTGTGGAAGAAGCTGAGGAAGGTGTTCGTGAGGGAGATGCTGAGCAGCGCCAGCCTGGAGGCATGTTACGTGCTGAGGAAGGA ACAGGTGCGGAACTCGGTGAAGGAGGTGTACTCGAGGTGCGTCGATGGGGCGATGGACGTTGGCGAAATGGCGTTCAAAACGACGACGAATGCTATGATG AGCATGCTTTGGGGAGGCGTGGAGGAAGCCCTAGGGAAGACGAGCAGTACTAGCTTTTACAGTGAGTTTAGGGACTTGGAGACGGAGATGTTGGTTCTGA TGGGAACCCCTAACGTGTCAGATTTCGTACCCGCTTTGGCCAGGTTCGACTTGCAAGGGATCCAGAAGAAGTCCAAGGTGTTGCTCGAAAAGTTCGATGT GATTCTGAGCTCGGCGATCGAGGAACGACTGAGGTTAGTCGAGAAGAGGGGAGATACAAGGAAGGATTTTTTGCAAGTATTACTGGATTTCAACCGGGCT GGCCATGTTGATACATGTATTACCATCAATCAAGTCAAAGCTTTGCTTATGGACATATTAGTTGGTGGAACAGACACAACAGCAACCATGATAGAGTGGA CGATGGCAGAGCTAGTCAAGCATCCAGCCACAATGGCGAAAGTCTACGAAGAACTCGACCGAGTCGTGGGACAAAACGGCATCGTGGAAGAATCCCACCT CCACAAGCTAAGCTACCTAGAAGCAGTGATCAAGGAAACGTCCAGGCTACATCCAGCGTTGCCACTGCTAGTGCCACGGTGTCCTAGCCAGACGTGCGAG TTAGGCGGCTACACCATACCAAAGGGCACGATCGTCTATCTGAACGCGTACGCGCTCCACACGGACCCGGAGCTGTGGGACCAACCCCTGGAGTTCGAAC CGGAGAGGTTTCTCGACGCGGGGGACGACGAGGAAAACGTGAAGTTTGACTTTCAGGGGAACAATTTCCAGTTCCTTCCGTTTGGATCGGGGAGGAGGGT CTGTCCTGGACAGCCGTTGGGGGTGAGTACGCAGAAGTACGTGTTGGCTACGCTTCTGCACTCTTTTGAGTGGAAGCTGCCGGAGGGGAGTGAGCTGGAG TTGTCGGATAAGTTTGGGATCGTTATCAAGAAGATGAATCCTCTGATCCTTGTTCCGACTCCCAGGCTGTCCAATTTGGAGCTCTACTAG
AA sequence Show only first row Show all	>Lus10028914 pacid=23177279 polypeptide=Lus10028914 locus=Lus10028914.g ID=Lus10028914.BGIv1.0 annot-version=v1.0 MALNILHDLQTWYTSPAMDTVKFLVAPILVAILTSFLLTKKWTSKGAPLPPGPTGLPIVGYLPFLGVHLHHEFTKLAATYGPVYKMWLGTKLCVVVSSPS LVKEVVRDQDSVFANRDPPIASVVLTYGCDDVAFSNYGPLWKKLRKVFVREMLSSASLEACYVLRKEQVRNSVKEVYSRCVDGAMDVGEMAFKTTTNAMM SMLWGGVEEALGKTSSTSFYSEFRDLETEMLVLMGTPNVSDFVPALARFDLQGIQKKSKVLLEKFDVILSSAIEERLRLVEKRGDTRKDFLQVLLDFNRA GHVDTCITINQVKALLMDILVGGTDTTATMIEWTMAELVKHPATMAKVYEELDRVVGQNGIVEESHLHKLSYLEAVIKETSRLHPALPLLVPRCPSQTCE LGGYTIPKGTIVYLNAYALHTDPELWDQPLEFEPERFLDAGDDEENVKFDFQGNNFQFLPFGSGRRVCPGQPLGVSTQKYVLATLLHSFEWKLPEGSELE LSDKFGIVIKKMNPLILVPTPRLSNLELY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12320		CYP706A6	"cytochrome P450, family 706, ...		Lus10028914 [exp]	0	1
AT5G42170			SGNH hydrolase-type esterase s...		Lus10003720 [exp]	4.9	0.8279
AT3G29250		AtSDR4	short-chain dehydrogenase redu...		Lus10022562 [exp]	10.0	0.8536
AT1G18530			EF hand calcium-binding protei...		Lus10039961 [exp]	15.0	0.8089
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Lus10033172 [exp]	18.0	0.7950
AT1G68810	bHLH	bHLH030	basic helix-loop-helix (bHLH) ...		Lus10001885 [exp]	20.0	0.8397
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10016211 [exp]	30.6	0.7987
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Lus10027164 [exp]	32.7	0.8224
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Lus10007404 [exp]	34.3	0.7797
AT3G26770			NAD(P)-binding Rossmann-fold s...		Lus10016177 [exp]	35.9	0.7861
AT4G14750		IQD19	IQ-domain 19 (.1)		Lus10009187 [exp]	39.1	0.8307

Compare expression of checked genes

Lus10028914 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.