Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12310 258 / 5e-90 Calcium-binding EF-hand family protein (.1) AT1G62820 251 / 2e-87 Calcium-binding EF-hand family protein (.1) AT5G21274 146 / 1e-45 ACAM-6, CAM6 calmodulin 6 (.1) AT3G43810 146 / 1e-45 CAM7 calmodulin 7 (.1) AT3G56800 144 / 4e-45 ACAM-3, CAM3 calmodulin 3 (.1) AT2G27030 144 / 4e-45 CAM5, CAM2, ACAM-2, ACAM-5 calmodulin 5 (.1.2.3) AT2G41110 144 / 4e-45 ACAM-2, ATCAL5, CAM2 calmodulin 2 (.1.2) AT5G37780 143 / 1e-44 ACAM-1, TCH1, CAM1 TOUCH 1, calmodulin 1 (.1.2.3) AT1G66410 143 / 1e-44 ACAM-4, CAM4 calmodulin 4 (.1.2) AT3G22930 121 / 1e-35 CML11 calmodulin-like 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004332 [exp] 289 / 3e-102 AT1G12310 258 / 4e-90 Calcium-binding EF-hand family protein (.1) Lus10032205 [exp] 282 / 2e-99 AT1G12310 263 / 7e-92 Calcium-binding EF-hand family protein (.1) Lus10024567 [exp] 281 / 4e-99 AT1G12310 261 / 2e-91 Calcium-binding EF-hand family protein (.1) Lus10027283 [exp] 146 / 1e-45 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10038981 [exp] 146 / 1e-45 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10037423 [exp] 146 / 1e-45 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10041288 [exp] 146 / 1e-45 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10022589 [exp] 120 / 3e-35 AT3G43810 255 / 2e-88 calmodulin 7 (.1) Lus10039391 [exp] 116 / 6e-34 AT4G14640 268 / 1e-93 calmodulin-like 8, calmodulin 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G115000 [exp] 265 / 1e-92 AT1G12310 266 / 4e-93 Calcium-binding EF-hand family protein (.1) Potri.001G117900 [exp] 261 / 2e-91 AT1G12310 266 / 5e-93 Calcium-binding EF-hand family protein (.1) Potri.016G024700 [exp] 146 / 1e-45 AT3G43810 300 / 2e-106 calmodulin 7 (.1) Potri.009G021500 [exp] 146 / 1e-45 AT3G43810 300 / 2e-106 calmodulin 7 (.1) Potri.006G026700 [exp] 146 / 1e-45 AT3G43810 300 / 2e-106 calmodulin 7 (.1) Potri.001G222200 [exp] 144 / 2e-44 AT2G27030 304 / 6e-107 calmodulin 5 (.1.2.3) Potri.012G041000 [exp] 142 / 2e-44 AT5G37780 283 / 9e-100 TOUCH 1, calmodulin 1 (.1.2.3) Potri.015G032600 [exp] 142 / 4e-44 AT5G37780 284 / 3e-100 TOUCH 1, calmodulin 1 (.1.2.3) Potri.010G080900 [exp] 119 / 3e-35 AT4G14640 270 / 2e-94 calmodulin-like 8, calmodulin 8 (.1) Potri.008G159300 [exp] 118 / 8e-35 AT3G22930 235 / 1e-80 calmodulin-like 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10028915 pacid=23177119 polypeptide=Lus10028915 locus=Lus10028915.g ID=Lus10028915.BGIv1.0 annot-version=v1.0 ATGGGAAAGGTTAGCGACGACCAGGTTCATTCCATGAAAGAGGCTTTCGTCCTCTTCGACACCGACAGCGACGGAAAAATCGCGCCCTCCGAGCTCGGGA TCCTCATGCGATCCCTCGGCGGGAACCCTACCCAGGCCCAGCTCAAGGCCATCGTCGCCGAGGAGAAGCTAACCGCTCCGTTCGATTTCCAGAGGTTCCT CGATATCATGGGGAAGCACATGAAAGCCGAGCCCTTCGATCGCCAGCTCCGCGACGCTTTCAAGGTCCTCGACAAGGACTCCACCGGGTTCGTCTCAGTG CAGGATCTGCGCCACATCTTGACGAGTATCGGGGAGAAGCTGGAGCCCGCGGAGTTCGACGAGTGGATTAGAGAGGTGGATGTCGGATCGGATGGGAAGA TCCGGTACGAGGATTTCATTGCTAGGATGGTTGCCAAGTGA
AA sequence Show only first row Show all	>Lus10028915 pacid=23177119 polypeptide=Lus10028915 locus=Lus10028915.g ID=Lus10028915.BGIv1.0 annot-version=v1.0 MGKVSDDQVHSMKEAFVLFDTDSDGKIAPSELGILMRSLGGNPTQAQLKAIVAEEKLTAPFDFQRFLDIMGKHMKAEPFDRQLRDAFKVLDKDSTGFVSV QDLRHILTSIGEKLEPAEFDEWIREVDVGSDGKIRYEDFIARMVAK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12310			Calcium-binding EF-hand family...		Lus10028915 [exp]	0	1
AT1G11360			Adenine nucleotide alpha hydro...		Lus10038561 [exp]	3.0	0.8815
AT5G17210			Protein of unknown function (D...		Lus10010077 [exp]	3.0	0.8734
AT1G26690			emp24/gp25L/p24 family/GOLD fa...		Lus10030436 [exp]	4.7	0.8810
AT4G10810			unknown protein		Lus10023038 [exp]	5.9	0.8716
AT1G12310			Calcium-binding EF-hand family...		Lus10024567 [exp]	7.0	0.8095
AT5G20650		COPT5	copper transporter 5 (.1)		Lus10007092 [exp]	7.9	0.8226
AT4G29340		PRF4	profilin 4 (.1)		Lus10034988 [exp]	8.2	0.8727
AT1G14920	GRAS	RGA2, GAI	RESTORATION ON GROWTH ON AMMON...		Lus10009133 [exp]	8.9	0.8495
AT2G38610			RNA-binding KH domain-containi...		Lus10035015 [exp]	11.4	0.8363
AT3G05545			RING/U-box superfamily protein...		Lus10029886 [exp]	11.6	0.8122

Compare expression of checked genes

Lus10028915 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.