Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22730 726 / 0 Leucine-rich repeat protein kinase family protein (.1) AT2G45340 618 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G51560 608 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G31420 209 / 9e-59 FEI1 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) AT5G07280 212 / 2e-57 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT4G08850 208 / 2e-56 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) AT5G63930 207 / 7e-56 Leucine-rich repeat protein kinase family protein (.1) AT2G33170 205 / 2e-55 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT4G34220 201 / 5e-55 Leucine-rich repeat protein kinase family protein (.1) AT5G62230 201 / 4e-54 ERL1 ERECTA-like 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004333 [exp] 1285 / 0 AT4G22730 763 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10031123 [exp] 654 / 0 AT5G51560 855 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10031703 [exp] 648 / 0 AT5G51560 851 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10004032 [exp] 580 / 0 AT2G45340 747 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030279 [exp] 503 / 5e-170 AT2G45340 648 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10022679 [exp] 233 / 6e-66 AT3G51740 926 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Lus10003612 [exp] 206 / 2e-55 AT1G35710 751 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10028612 [exp] 201 / 1e-53 AT5G48940 1051 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10031108 [exp] 196 / 2e-52 AT5G62230 1422 / 0.0 ERECTA-like 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G117800 [exp] 811 / 0 AT4G22730 847 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.003G115100 [exp] 778 / 0 AT4G22730 788 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.015G130100 [exp] 685 / 0 AT5G51560 940 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.012G128700 [exp] 658 / 0 AT5G51560 906 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.014G068700 [exp] 654 / 0 AT2G45340 831 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.002G147000 [exp] 653 / 0 AT2G45340 808 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.003G105000 [exp] 214 / 1e-60 AT1G31420 893 / 0.0 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) Potri.001G129000 [exp] 210 / 4e-59 AT1G31420 928 / 0.0 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) Potri.014G195100 [exp] 214 / 5e-58 AT1G35710 681 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.006G220100 [exp] 209 / 7e-57 AT2G26330 1547 / 0.0 QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1, ERECTA, Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10028916 pacid=23177234 polypeptide=Lus10028916 locus=Lus10028916.g ID=Lus10028916.BGIv1.0 annot-version=v1.0 ATGGGTCTTCTTCTCTTTCCATCCTTGTACATGGGTCTGCTCTTGATTCCACTATCAATTATTGTTGTTTCTGGGAACGCGGAGCTCAGAGCACTCATGG AGCTGAAATCTGCTCTTGACCCGACAAACAAGCTGTTGAGGTCGTGGGGCAGCGATGGCGAGCCTTGCAGCGGATCGTTCGAAGGGGTCGCCTGCAACGA GCATCGCAAAGTGGCTAACATTTCTCTCCAGGGGAAAGGTCTCTCCGGAGCTCTTTCCCCTGCAATTTCAGAGCTCAAATGCTTGTCTGGTCTCTACTTG CATTACAACTCCCTTTCTGGAGATATACCCAGAGAGCTAGCCAATCTGACCGAATTGTCTGATCTTTACCTCAATGTCAATAACCTTTCTGGCATCATTC CTCCTCGGATCGGTAACATGGCAGCTTTGCAAGTTGTGGAGCTATGCTGCAATCAGCTGACAGGGGACATACCAGCAGAGATGGGTGATTTGAAGAAGCT AAGCGTTATAGCATTGCAGCACAACAAACTAAGCGGCCAAATACCTCGAAGTTTAGAGAGCTTACAGACTTTGACAAGGCTTGATTTGGGGTTCAACACT CTCTCCGGTGGAATCCCTCTCGGAATAGCTCGACTCCCACGTCTACAACTCCTGGACGTCAGAAACAATTCCCTCTCAGGAATTGTCCCTTCTGGTACTT CTTCTTCTGCTTCCATTCCTACTCTCAGTTTTCCATGTCTGAACTTTTTGTTTGAAATGATGTGTGAAGCTTTACAGAGATTAAACGAAGGGTTCGATTT CGAGAACAACCAAGGTCTTTGCGGAGATGGGATTCCAGCGTTAAGAGCTTGCTCGATCTTTGACAACGTGAACGTTAATGATCTCGGAGGGGGGAAAAGT CATGATCAGCCGTTCATTAACGACACATTAACGAAAGAAACTCCAGAAAAGCCATCTGTCTTCAATCAGCAGCCCGAGTTGTGCAGTAATAACGAAACCG GTTGCTCGAAATCCTCCCCCAAGCTGCCAAAGATTGCTATTGTTGCAGGAGTCATAACCGTTACGATTGCATTGATGAGTGTATGCTTTCTAGTCGTTTT CAGATACCGGAGGAGGAAACAGAAGATCGGGAATGCATCATCCGAGTCTCCGGATAGTCATGTGAGTGGAAGTCATGACCAGCATCAGCAGCTCAAGGAA CTGAAGAGAGGAAGAAGTCTTGTGTCACCACTTGTGAGCTTGGAGTATCCCAATGGGTTTCATTTACCTGAGGAGAATGATGACTACCTGAACAGCTTCA GATTCAACCTGGAAGAGATCGAGTCAGCGACTCTGTGCTTCTCTGAAGCGAATTTGTTAGGGAAAGGGAGCTTCTCGTCTGTTTATAGAGGGGTGTTGAT GAGAGATGGTACGGATGTTGCTATCACTAGCATCAACATGACTAGCTGCAAATCGGAAGATTCCGAGTTTGCTAAAGGGCTGAGCCTGTTGACCTCGTTG AGGCACGATAATCTCGTTCGACTTCGGGGATTCTGTTGCTCCAAAGGAAGAGGTGAATGTTACCTGGTTTATGATTTTGCTCCTAAAGGGAAGTTGTCCA AGTACCTTGAAGCAGATGAAGGGAGTAGTAGCCCAGTGCTTGACTGGTCCTCCAGGGTATCCATCATCAATGGCATTGCAAAAGGTCTTGGATATCTGCA CAGAGCTGAAGCAAGCAAACCAACAATCATTCACCGGAACATATCGGTGGACAAGATTCTGCTCGACCGGCAGCTCAACCCACTGATTGCGGAATCAGGA CTTCCTAAGCTTTTAGCAGATGATATCATCTTCTTGACACTGAAAACAAGTGCTGCAATGGGATATCTGGCTCCAGAATACATAACCACAGGGAGCTTCA ATGAGAAAAGCGATGTCTATGCATTTGGGGCAATCATCCTTCAAGTACTATGTGGAAGAAACATGCTCCCTAGCTCGATGAGGGCGGCGGCTGCTTCGTG TAGATACCAAGATTTTATTGACAAAAGCCTGAAAGGGAACTTCTCTGAGAATGAGGCTGGGATACTTGCAGACATTGCTCTTCGGTGCACTCACGAATTG CCCGAGGAGCGGCCAGACATGGTTGCTGTGATTGAAGAGTTGAACAGAAGCCAAACTTTTACTCCTTGA
AA sequence Show only first row Show all	>Lus10028916 pacid=23177234 polypeptide=Lus10028916 locus=Lus10028916.g ID=Lus10028916.BGIv1.0 annot-version=v1.0 MGLLLFPSLYMGLLLIPLSIIVVSGNAELRALMELKSALDPTNKLLRSWGSDGEPCSGSFEGVACNEHRKVANISLQGKGLSGALSPAISELKCLSGLYL HYNSLSGDIPRELANLTELSDLYLNVNNLSGIIPPRIGNMAALQVVELCCNQLTGDIPAEMGDLKKLSVIALQHNKLSGQIPRSLESLQTLTRLDLGFNT LSGGIPLGIARLPRLQLLDVRNNSLSGIVPSGTSSSASIPTLSFPCLNFLFEMMCEALQRLNEGFDFENNQGLCGDGIPALRACSIFDNVNVNDLGGGKS HDQPFINDTLTKETPEKPSVFNQQPELCSNNETGCSKSSPKLPKIAIVAGVITVTIALMSVCFLVVFRYRRRKQKIGNASSESPDSHVSGSHDQHQQLKE LKRGRSLVSPLVSLEYPNGFHLPEENDDYLNSFRFNLEEIESATLCFSEANLLGKGSFSSVYRGVLMRDGTDVAITSINMTSCKSEDSEFAKGLSLLTSL RHDNLVRLRGFCCSKGRGECYLVYDFAPKGKLSKYLEADEGSSSPVLDWSSRVSIINGIAKGLGYLHRAEASKPTIIHRNISVDKILLDRQLNPLIAESG LPKLLADDIIFLTLKTSAAMGYLAPEYITTGSFNEKSDVYAFGAIILQVLCGRNMLPSSMRAAAASCRYQDFIDKSLKGNFSENEAGILADIALRCTHEL PEERPDMVAVIEELNRSQTFTP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G22730			Leucine-rich repeat protein ki...		Lus10028916 [exp]	0	1
AT4G22730			Leucine-rich repeat protein ki...		Lus10004333 [exp]	1.0	0.9313
AT5G10180		SULTR2;1, AST68	sulfate transporter 2;1, ARABI...		Lus10016806 [exp]	1.4	0.9122
AT5G48800			Phototropic-responsive NPH3 fa...		Lus10025928 [exp]	4.9	0.8998
AT2G36910		ATMDR1, ATPGP1,...	P-GLYCOPROTEIN 1, ARABIDOPSIS ...		Lus10023929 [exp]	6.3	0.8946
AT1G06475			unknown protein		Lus10007328 [exp]	6.3	0.8307
AT3G05545			RING/U-box superfamily protein...		Lus10031491 [exp]	6.9	0.8243
AT1G61820		BGLU46	beta glucosidase 46 (.1.3)		Lus10007655 [exp]	7.3	0.8846
AT3G03770			Leucine-rich repeat protein ki...		Lus10005689 [exp]	7.4	0.8705
AT4G30190		PMA2, AHA2	PLASMA MEMBRANE PROTON ATPASE ...		Lus10007949 [exp]	8.0	0.8784
AT1G80530			Major facilitator superfamily ...		Lus10017971 [exp]	8.1	0.8883

Compare expression of checked genes

Lus10028916 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.