Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02570 1253 / 0 AXR6, ATCUL1 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) AT1G02980 985 / 0 ATCUL2, CUL2 cullin 2 (.1) AT1G43140 949 / 0 Cullin family protein (.1) AT1G59790 412 / 2e-138 Cullin family protein (.1) AT1G26830 393 / 3e-126 CUL3A, ATCUL3A, ATCUL3 cullin 3A, cullin 3 (.1) AT1G69670 385 / 4e-123 CUL3B, ATCUL3B ARABIDOPSIS THALIANA CULLIN 3B, cullin 3B (.1) AT5G46210 338 / 8e-105 CUL4, ATCUL4 cullin4 (.1) AT1G59800 273 / 1e-86 Cullin family protein (.1) AT2G04660 57 / 5e-08 APC2 anaphase-promoting complex/cyclosome 2 (.1) AT4G12100 53 / 4e-07 Cullin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004334 [exp] 1463 / 0 AT4G02570 1279 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Lus10024562 [exp] 1409 / 0 AT4G02570 1271 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Lus10032200 [exp] 1402 / 0 AT4G02570 1269 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Lus10036739 [exp] 400 / 5e-129 AT1G26830 1335 / 0.0 cullin 3A, cullin 3 (.1) Lus10037188 [exp] 394 / 3e-126 AT1G26830 1328 / 0.0 cullin 3A, cullin 3 (.1) Lus10012835 [exp] 390 / 6e-125 AT1G26830 1320 / 0.0 cullin 3A, cullin 3 (.1) Lus10030485 [exp] 383 / 3e-122 AT1G26830 1317 / 0.0 cullin 3A, cullin 3 (.1) Lus10023306 [exp] 309 / 3e-95 AT5G46210 1077 / 0.0 cullin4 (.1) Lus10038504 [exp] 206 / 9e-58 AT5G46210 913 / 0.0 cullin4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G217300 [exp] 1228 / 0 AT4G02570 1272 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Potri.003G115500 [exp] 1227 / 0 AT4G02570 1209 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Potri.010G023800 [exp] 1213 / 0 AT4G02570 1265 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Potri.001G117200 [exp] 1208 / 0 AT4G02570 1226 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Potri.008G148300 [exp] 390 / 3e-125 AT1G26830 1342 / 0.0 cullin 3A, cullin 3 (.1) Potri.010G093200 [exp] 389 / 9e-125 AT1G26830 1345 / 0.0 cullin 3A, cullin 3 (.1) Potri.011G084400 [exp] 355 / 5e-111 AT5G46210 1250 / 0.0 cullin4 (.1) Potri.004G132900 [exp] 346 / 3e-107 AT5G46210 1211 / 0.0 cullin4 (.1) Potri.008G217700 [exp] 236 / 1e-71 AT4G02570 225 / 3e-68 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Potri.008G224075 [exp] 219 / 8e-68 AT4G02570 218 / 4e-68 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00888 [flax] [poplar] Cullin Cullin family CL0123 [flax] [poplar] HTH PF10557 [flax] [poplar] Cullin_Nedd8 Cullin protein neddylation domain
Representative CDS sequence Show only first row Show all	>Lus10028917 pacid=23177110 polypeptide=Lus10028917 locus=Lus10028917.g ID=Lus10028917.BGIv1.0 annot-version=v1.0 ATGGAGCGAAAAGTTATTGAATTGGACCAAGGATGGGACTATATGCAAAACGGGATCACTAAGCTGAAGAGAATTCTGGAGGGGGCTGTTGAGCAATTCA ACTCTGAAGAGTATATGATGCTTTACACAACTATCTACAACATGTGTACACAGAAGCCTCCTCATGACTACTCCCAACAGCTTTACGACAAGTACAGGGA GGCATTCGAAGAGTACATTAGCTCCACTGTACTCCCGTCAATCAGAGAGAAGCATGATGAGTTTATGTTGAGGGAGCTTGTCAAAAGATGGGCCAATCAT AAGCTTATGGTCAGATGGCTTTCACGTTTCTTCCATTATCTTGATCGTTACTTCATTGCTCGAAGGTCACTTCCTGCGTTGAATGTGGTTGGGCTTACCT GCTTTCGCACCCTGGTTTACGAGGAGATAAATGTCAAAGCCAGGAATGCTGTGATTGCTCTTATTGATAAAGAGCGTGAGGGTGAGCAGATTGATAGAGC CTTGTTGAAGAACGTGTTAGATATATTTGTGGAAATTGGAATGGGGCAAATGGATTGCTATGAGAAAGACTTTGAAGCACCTATGCTGGAAGATACTGGT GTTTACTACAGCCAGAAAGCTTCAAACTGGATACAGGAGGATTCTTGTCCAGCATACATGCTAAAGTCTGAGGAATGCTTAAAGAAGGAAAGAGATAGAG TTTCAAATTATTTGCATTCAAGCAGTGAGGCTAAATTAGTTGAGAAAGTGCAACATGAGCTGTTGGTTAATTTCTCAACTCAGTTGCTTGACAAAGAGAA TTCTGGATGTCGTGCACTGCTCAGGGATGATAAGGTAGAAGATCTCTCTCGGATGTATAGGCTTTTTCACAAAATAACCAAAGGTTTAGAACCTGTTGGA AACAAAGGTTTAGATCCTGTTGCAACCATCTTTAAGCAGCATATTACTGCTGAAGGCACAGTATTGGTACAGCAGGCAGAGGATGCTGCGAGTAACCAGT CTACAAATGGTGGTGGCCAAGAACAGGTGCTCATAAGGAAAGTAATTGAGATCCATGACAAGTATCTTGCCTATGTTGGCGATTGTTTCCAAAATCATAC CTTGTTTCACAAGGCAATGAAAGAAGCATTTGAGATATTCTGCAACAAAACTGTTGGTGGAAGTCCTAGTGCTGAACTTCTTGCAACCTTCTGCGATAAT ATCCTCAAGAAAGGTGGCAGTGAGAAGCTCAGTGATGAAGCAATCGAGGAAATACTGGAGAAGGTTGTTAAACTGCTTGCATATATTAGTGACAAGGACC TTTTTGCTGAATTCTACAGAAAAAAACTTGCACGGCGTCTGCTCTTTGAACGCAGTGCTAATGAGGAGCACGAGAAGAGTATTTTAACTAAGCTTAAGCA GCAATGTGGTGGACAATTCACTTCAAAGATGGAAGGAATGGTCACTGATTTGACGCTAGCAAAGGATAACCAAGCTGAATTTGAGAATTATCTATCTAAC AATCCAAGTGCACATCCCGGGATCGACTTGTCCGTCAATGTCCTTACAACCGGGTTTTGGCCTAGCTATAAGTCTTCTGATTTGAATCTTCCTTCGGAGA TGGTTAGGGGTGTCCAAGTTTTCAAGGAATTTTATGACACAAAAAGTAAGCACAGGAAGCTTACATGGATATACTCTCTTGGATCTTGTCAACTCACTGG GAAGTTTGATCAAAAAAATATCGAGATGGTCGTCTCTACATATCAGGCTGCCATACTTCTGCTGTTCAATACCTCGGATAGACTTAGTTACTCCGAGATC ATGACACAGTCAAACTTGGGTCATGAAGACTTGGTTAGATTGCTTCATTCGTTATCATGTGCCAAATATAAAATCCTTATCAAGGAGCCAAGCACAAAGA CCGTTTCCCAAACAGATATCTTCGAGTTCAATCCGAAGTTTACTGATAGAATGAGGAGGATCAAGATTCCTCTTCCCGTGGTGGACGAAAGGAAGAAGGT TGTAGAGGATGTTGACAAGGACCGGAGATATGCGATAGACGCTGCCATTGTGCGTATAATGAAGAGCAGGAAAGTGTTGGGGCATCAACAGCTGGTGATG GAGTGTGTCGAGCAGCTCAGCCGCATGTTCAAGCCGGACATTAAAGCTATCAAGAAGCGGATGGAGGATTTAATTGCCAGAGACTATCTGGAGAGAGACA AGGACAATGCCAACATGTTCCGCTACTTGGCCTAG
AA sequence Show only first row Show all	>Lus10028917 pacid=23177110 polypeptide=Lus10028917 locus=Lus10028917.g ID=Lus10028917.BGIv1.0 annot-version=v1.0 MERKVIELDQGWDYMQNGITKLKRILEGAVEQFNSEEYMMLYTTIYNMCTQKPPHDYSQQLYDKYREAFEEYISSTVLPSIREKHDEFMLRELVKRWANH KLMVRWLSRFFHYLDRYFIARRSLPALNVVGLTCFRTLVYEEINVKARNAVIALIDKEREGEQIDRALLKNVLDIFVEIGMGQMDCYEKDFEAPMLEDTG VYYSQKASNWIQEDSCPAYMLKSEECLKKERDRVSNYLHSSSEAKLVEKVQHELLVNFSTQLLDKENSGCRALLRDDKVEDLSRMYRLFHKITKGLEPVG NKGLDPVATIFKQHITAEGTVLVQQAEDAASNQSTNGGGQEQVLIRKVIEIHDKYLAYVGDCFQNHTLFHKAMKEAFEIFCNKTVGGSPSAELLATFCDN ILKKGGSEKLSDEAIEEILEKVVKLLAYISDKDLFAEFYRKKLARRLLFERSANEEHEKSILTKLKQQCGGQFTSKMEGMVTDLTLAKDNQAEFENYLSN NPSAHPGIDLSVNVLTTGFWPSYKSSDLNLPSEMVRGVQVFKEFYDTKSKHRKLTWIYSLGSCQLTGKFDQKNIEMVVSTYQAAILLLFNTSDRLSYSEI MTQSNLGHEDLVRLLHSLSCAKYKILIKEPSTKTVSQTDIFEFNPKFTDRMRRIKIPLPVVDERKKVVEDVDKDRRYAIDAAIVRIMKSRKVLGHQQLVM ECVEQLSRMFKPDIKAIKKRMEDLIARDYLERDKDNANMFRYLA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02570		AXR6, ATCUL1	AUXIN RESISTANT 6, cullin 1 (....		Lus10028917 [exp]	0	1
AT4G10570		UBP9	ubiquitin-specific protease 9 ...		Lus10008276 [exp]	3.7	0.8237
AT3G48860			unknown protein		Lus10043194 [exp]	5.7	0.8200
AT3G17205		UPL6	ubiquitin protein ligase 6 (.1...		Lus10017098 [exp]	8.8	0.8165
AT1G27180			disease resistance protein (TI...		Lus10018658 [exp]	9.0	0.7762
AT5G18480		PGSIP6	plant glycogenin-like starch i...		Lus10000817 [exp]	10.5	0.7971
AT1G17720		ATBBETA, ATB BE...	Protein phosphatase 2A, regula...		Lus10015635 [exp]	14.5	0.7496
AT4G38600		UPL3, KAK	UBIQUITIN-PROTEIN LIGASE 3, KA...		Lus10019908 [exp]	17.7	0.7800
AT5G22030		UBP8	ubiquitin-specific protease 8 ...		Lus10013599 [exp]	18.2	0.7870
AT4G24480			Protein kinase superfamily pro...		Lus10028168 [exp]	20.2	0.7274
AT4G35470		PIRL4, DREB1C	plant intracellular ras group-...		Lus10004558 [exp]	23.7	0.7852

Compare expression of checked genes

Lus10028917 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.