Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12330 353 / 5e-119 unknown protein AT5G12900 202 / 4e-60 unknown protein AT3G60680 59 / 2e-09 Plant protein of unknown function (DUF641) (.1) AT2G45260 56 / 2e-08 Plant protein of unknown function (DUF641) (.1) AT5G58960 53 / 1e-07 GIL1 GRAVITROPIC IN THE LIGHT, Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) AT1G53380 51 / 7e-07 Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) AT3G14870 49 / 4e-06 Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) AT1G29300 44 / 0.0001 UNE1 unfertilized embryo sac 1, Plant protein of unknown function (DUF641) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004335 [exp] 535 / 0 AT1G12330 468 / 7e-162 unknown protein Lus10024559 [exp] 402 / 2e-138 AT1G12330 479 / 3e-166 unknown protein Lus10032197 [exp] 399 / 3e-137 AT1G12330 476 / 2e-165 unknown protein Lus10031820 [exp] 165 / 4e-46 AT5G12900 454 / 2e-154 unknown protein Lus10031249 [exp] 163 / 3e-45 AT5G12900 448 / 1e-151 unknown protein Lus10009284 [exp] 59 / 2e-09 AT3G60680 541 / 0.0 Plant protein of unknown function (DUF641) (.1) Lus10001989 [exp] 55 / 3e-08 AT2G45260 671 / 0.0 Plant protein of unknown function (DUF641) (.1) Lus10016444 [exp] 54 / 7e-08 AT5G58960 635 / 0.0 GRAVITROPIC IN THE LIGHT, Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) Lus10030291 [exp] 54 / 1e-07 AT2G45260 668 / 0.0 Plant protein of unknown function (DUF641) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G115700 [exp] 402 / 1e-138 AT1G12330 503 / 2e-175 unknown protein Potri.001G117000 [exp] 388 / 5e-133 AT1G12330 465 / 1e-160 unknown protein Potri.003G210200 [exp] 197 / 2e-57 AT5G12900 603 / 0.0 unknown protein Potri.001G016600 [exp] 188 / 1e-54 AT5G12900 555 / 0.0 unknown protein Potri.002G145900 [exp] 59 / 1e-09 AT2G45260 692 / 0.0 Plant protein of unknown function (DUF641) (.1) Potri.002G145000 [exp] 56 / 2e-08 AT3G60680 494 / 4e-172 Plant protein of unknown function (DUF641) (.1) Potri.014G067600 [exp] 53 / 1e-07 AT2G45260 462 / 3e-163 Plant protein of unknown function (DUF641) (.1) Potri.001G387700 [exp] 52 / 4e-07 AT1G53380 524 / 0.0 Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) Potri.014G066600 [exp] 51 / 8e-07 AT3G60680 522 / 0.0 Plant protein of unknown function (DUF641) (.1) Potri.009G041000 [exp] 50 / 1e-06 AT5G58960 466 / 2e-159 GRAVITROPIC IN THE LIGHT, Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028918 pacid=23177270 polypeptide=Lus10028918 locus=Lus10028918.g ID=Lus10028918.BGIv1.0 annot-version=v1.0 ATGGCGCCTGCAGCAGCAGCACCAGCTTCATCATCTTCTCCAGTTTCTTCCTCTTCTCGTTCCCCTGCTTCCCTCAACCCTTCTTCTCCAGAAGAACAGT GGAAGATCGCGGTCGCGGAGCTCTCCCACAAGCTGATCCAGACGACTCGGAAGCGAGACGAGGCGATTCTAGAAGCTTCTCGGCTGAAACACACCATGGC AGAGCTTGAAAATAAGCTCAACAAGCTCGAGATCTACTGCCACAACTTGAGCTCCGGACTCGAAGAATGCAACACCACTATAAACAACAACATCAACAAC AACTCTAACAAGATCATCGTCGACCGATTTCTGGTCTCCGTCTCCGAATCGAGATCCTCCGTCCGAGTCCTGGCCCGATCCTTGACTTCACAGCTCTCGC AGTACAACGCAGGCAAGGTGTTCGACAAAATATCGACTCCACCTCTCCAGCCCTGCGACGTCAAAATCTCCTCTTCCTCCACAAAAAACCCCAAAGCAGT TCTAATCCACTTCGAGGCGCTGCTCAACAGGATCTTCTTCGAAGACTTCGAAACCCTCGGGTTCCAGAAAAGCACCCCTGTCCAAATCCTGAACCCGGTG GACAGATGCGAATCCAATTACGCGACGTTCGAGGCGCTGAAGGAAGAGCTGACGTGGGAGGAAGTGTTGAGTAAAGGGACTCGCCATTTCAGCGAGCAGT TCAGCAGGTTCTGCGACCGGAAGATGAACGAGATCGTCGCGGTGTTGGGCTGGAACAGAGCATGGCCAGAGCCGCTGCTCCAGGCTTTCTTCGGCGCTTC CAAAGCCGTTTGGTTGGTTCACTTGCTAGCCAATTCGGTTCACCCCAGTCTTGCCGTGTTTCGAGTCGACCAAGGGATGGGGTTCGATTCGACTTACATG GAGGATATGAATGGGGACCGAGCCAAGAGGCTGGTCCCCACCACGGTCCGGCTCATGGTCGCGCCGGGATTCTACCTCTACGGGAATGTAATCAAGTGCA AAGTCGTATGCAGATATCTCAGTATCAGTAACCCTGCTCCATGA
AA sequence Show only first row Show all	>Lus10028918 pacid=23177270 polypeptide=Lus10028918 locus=Lus10028918.g ID=Lus10028918.BGIv1.0 annot-version=v1.0 MAPAAAAPASSSSPVSSSSRSPASLNPSSPEEQWKIAVAELSHKLIQTTRKRDEAILEASRLKHTMAELENKLNKLEIYCHNLSSGLEECNTTINNNINN NSNKIIVDRFLVSVSESRSSVRVLARSLTSQLSQYNAGKVFDKISTPPLQPCDVKISSSSTKNPKAVLIHFEALLNRIFFEDFETLGFQKSTPVQILNPV DRCESNYATFEALKEELTWEEVLSKGTRHFSEQFSRFCDRKMNEIVAVLGWNRAWPEPLLQAFFGASKAVWLVHLLANSVHPSLAVFRVDQGMGFDSTYM EDMNGDRAKRLVPTTVRLMVAPGFYLYGNVIKCKVVCRYLSISNPAP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12330			unknown protein		Lus10028918 [exp]	0	1
AT1G54510		ATNEK1	NIMA-related serine/threonine ...		Lus10001783 [exp]	2.4	0.8231
AT2G40130			Double Clp-N motif-containing ...		Lus10040206 [exp]	5.9	0.8460
AT5G51820		STF1, PGM1, ATP...	STARCH-FREE 1, ARABIDOPSIS THA...		Lus10027400 [exp]	6.5	0.8364
AT5G59020			Protein of unknown function (D...		Lus10016455 [exp]	13.1	0.8230
AT5G62990		EMB1692	embryo defective 1692, Ubiquit...		Lus10010567 [exp]	16.6	0.7953
AT5G66310			ATP binding microtubule motor ...		Lus10014268 [exp]	17.2	0.8136
AT2G32460	MYB	ATMYB101, AtM1	ARABIDOPSIS THALIANA MYB 1, my...		Lus10027189 [exp]	17.9	0.7019
AT1G11720		ATSS3	starch synthase 3 (.1.2)		Lus10020044 [exp]	20.7	0.7923
AT5G22900		ATCHX3	cation/H+ exchanger 3, ARABIDO...		Lus10021412 [exp]	21.2	0.8098
AT1G54570			Esterase/lipase/thioesterase f...		Lus10033848 [exp]	22.4	0.7616

Compare expression of checked genes

Lus10028918 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.