Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12240 830 / 0 ATBETAFRUCT4, VAC-INV VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) AT1G62660 828 / 0 Glycosyl hydrolases family 32 protein (.1) AT3G13790 486 / 1e-165 ATCWINV1, ATBFRUCT1 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) AT1G55120 448 / 2e-150 ATFRUCT5, ATCWINV3 6-fructan exohydrolase, beta-fructofuranosidase 5 (.1.2.3) AT3G13784 445 / 8e-150 ATCWINV5 cell wall invertase 5 (.1) AT5G11920 442 / 5e-149 ATCWINV6 6-&1-fructan exohydrolase (.1.2) AT3G52600 439 / 6e-147 ATCWINV2 cell wall invertase 2 (.1.2) AT2G36190 435 / 2e-145 ATCWINV4 cell wall invertase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004340 [exp] 1279 / 0 AT1G12240 833 / 0.0 VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) Lus10024605 [exp] 998 / 0 AT1G12240 805 / 0.0 VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) Lus10032242 [exp] 963 / 0 AT1G62660 800 / 0.0 Glycosyl hydrolases family 32 protein (.1) Lus10004031 [exp] 862 / 0 AT1G12240 783 / 0.0 VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) Lus10031144 [exp] 757 / 0 AT1G12240 729 / 0.0 VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) Lus10030278 [exp] 603 / 0 AT1G62660 562 / 0.0 Glycosyl hydrolases family 32 protein (.1) Lus10008392 [exp] 477 / 1e-161 AT3G13790 756 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Lus10017015 [exp] 469 / 5e-158 AT2G36190 683 / 0.0 cell wall invertase 4 (.1) Lus10001529 [exp] 466 / 1e-157 AT3G13790 598 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G112600 [exp] 961 / 0 AT1G12240 882 / 0.0 VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) Potri.003G126300 [exp] 902 / 0 AT1G12240 819 / 0.0 VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) Potri.015G127100 [exp] 753 / 0 AT1G62660 712 / 0.0 Glycosyl hydrolases family 32 protein (.1) Potri.006G227500 [exp] 488 / 2e-166 AT3G13790 660 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Potri.006G227400 [exp] 484 / 7e-165 AT3G13790 703 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Potri.006G210600 [exp] 479 / 8e-163 AT3G52600 770 / 0.0 cell wall invertase 2 (.1.2) Potri.016G077400 [exp] 468 / 1e-158 AT3G52600 755 / 0.0 cell wall invertase 2 (.1.2) Potri.016G077500 [exp] 464 / 1e-156 AT3G52600 751 / 0.0 cell wall invertase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF08244 [flax] [poplar] Glyco_hydro_32C Glycosyl hydrolases family 32 C terminal CL0143 [flax] [poplar] B_Fructosidase PF00251 [flax] [poplar] Glyco_hydro_32N Glycosyl hydrolases family 32 N-terminal domain CL0143 [flax] [poplar] PF11837 [flax] [poplar] DUF3357 Domain of unknown function (DUF3357)
Representative CDS sequence Show only first row Show all	>Lus10028922 pacid=23177280 polypeptide=Lus10028922 locus=Lus10028922.g ID=Lus10028922.BGIv1.0 annot-version=v1.0 ATGGCGGACAACAAACAGCCATTCCTTCCGGTCACCGGAGGCGAACCGTCGAAGAATCACGCACCGTCGTCGGGATCAAGAAAGAAGCTTCTCCTCGCCG TGTTCGGCGGCATTTTCGTGGTCTGCTTAATCCTCGCAGGAGGAGGTTACGATAAATCCGGCCTCGTTAAATCCGCCAGATTCGGAAGCGATTTGGATGA GGTGTTGGTGGGCCCAGCTGGAAGCGCAATCAGATCAGCTGTTTCTCGTGGGAAATCAGCAGGTGTGTCGGAGAAGGCCAATCTCCCGGAGCATCAGCTT CTCCGCGGCGAGAACGGCGTCACGGAAGAGTTCCCGTGGAACAACAGCATGCTGTCGTGGCAGAGGACGGCGTTCCACTTCCAGCCTGAGAAGAATTGGA TGAACGGACCATTGTTCTACAAAGGATGGTACCACTTCTTCTACCAATACAACCCAAACGCCCCCGTTTGGGGCGACATTGTGTGGGGCCACGCCGTATC TCGGGACCTAATCCACTGGCTCCACCTCCCATTAGCCATGGTCGCCGACCAATGGTACGACGTCAACGGAGTCTGGACCGGATCCGCCACCATCCTCCCT AACGGTAACCTCGTCATGCTCTACACAGGTTCAACCAACGAATCGGTCCAGGTTCAGAACCTAGCCTACCCAGCCGACCACAACGACCCCCTCCTACTGA ACTGGGTCAAGTACCCGGGCAACCCGGTCCTCTTCCCTCCTCTAGGTATCCACTTCAAGGACTTCCGCGACCCGACGACGGCGTGGCGGACACCAGAAGG GAAGTGGAGGATCACGATCGGGTCGAAGGTCAACAAAACCGGAATCGCTCTGGTTTATGACACCGATGATTTCATCAACTTCGATCTGAAAGATGGGATC CTCCACGGCGTTCCCGGGACCGGGATGTGGGAGTGCGTTGACTTTTATCCTGTGGCGGTTGACGGGCGGAACGGGATGGACACGTCGGCGAACGGTGCTG GGGTTAAGCATGTGATGAAGACGAGTTTGGATGATGATAGGCATGATTACTACGCGATTGGGAGTTACGATGAGGTGAATGCCAAGTGGGTACCCGATAA CCCGGAGATTGACGTTGGGATTGGAATTAGGTATGATTACGGCATCTTCTACGCTTCCAAGACGTTTTACGATCAGAGCAAGCAGAGGAGAGTGCTTTGG GGTTGGATTGGTGAGTCTGATAGTGAAGCTGCCGACGTTAGGAAAGGATGGGCTTCTCTTCAGGGGATTCCAAGGACAGTTGTTCTTGACACAAAGACGG GAAGCAATCTTTTGCAGTGGCCGGTGGAAGAGGCTGACAAATTGAGATTGAGAAGTCAGGAGTTCAACAACGTTGTAGCCAAGCCTGGATCAGTCGTGGC CATTAAAGTTGAATCTGCAACACAGCTAGATGTAGTGGCCGAATTCGAGCTAGACAAAGAAGCAGTAGAGAAGGCAGTCGAGTCCGACGAGGAATACAAG TGCAGCAGCAGCAAAGGTGCAGCTCAACGCGGCGCATTGGGGCCGTTCGGTCTACTGGTTCTTTCCGAAGACACCCTCAGTGAACAAACCCCTGTATATT TCTATGTCGTGAAAGGAAAGAATGGAACTTTGAGGACCTCATTCTGCACTGACCAGTCTAGGTCATCATTAGCGAACGACGTGAACAAGAAGCTGTACGG GAGCTTCGTGCCGGTGCTAGAAGGGGAGAAGTTCAAGGTTAGGATGTTGGTAGATCATTCAATCATAGAGAGTTTTGCACAAGGTGGAAGGTCAGTGATT ACTTCCAGAGTTTACCCAACGAAGGCTATATATGGAGCTGCTAGACTGTTCTTGTTCAATAATGCGACAGAGGCTGGAGTGACTGCCTCTCTTAAGGTTT GGCAGATGAACTCTGCATTCATCCGGCCATACCCAAACCTGTAG
AA sequence Show only first row Show all	>Lus10028922 pacid=23177280 polypeptide=Lus10028922 locus=Lus10028922.g ID=Lus10028922.BGIv1.0 annot-version=v1.0 MADNKQPFLPVTGGEPSKNHAPSSGSRKKLLLAVFGGIFVVCLILAGGGYDKSGLVKSARFGSDLDEVLVGPAGSAIRSAVSRGKSAGVSEKANLPEHQL LRGENGVTEEFPWNNSMLSWQRTAFHFQPEKNWMNGPLFYKGWYHFFYQYNPNAPVWGDIVWGHAVSRDLIHWLHLPLAMVADQWYDVNGVWTGSATILP NGNLVMLYTGSTNESVQVQNLAYPADHNDPLLLNWVKYPGNPVLFPPLGIHFKDFRDPTTAWRTPEGKWRITIGSKVNKTGIALVYDTDDFINFDLKDGI LHGVPGTGMWECVDFYPVAVDGRNGMDTSANGAGVKHVMKTSLDDDRHDYYAIGSYDEVNAKWVPDNPEIDVGIGIRYDYGIFYASKTFYDQSKQRRVLW GWIGESDSEAADVRKGWASLQGIPRTVVLDTKTGSNLLQWPVEEADKLRLRSQEFNNVVAKPGSVVAIKVESATQLDVVAEFELDKEAVEKAVESDEEYK CSSSKGAAQRGALGPFGLLVLSEDTLSEQTPVYFYVVKGKNGTLRTSFCTDQSRSSLANDVNKKLYGSFVPVLEGEKFKVRMLVDHSIIESFAQGGRSVI TSRVYPTKAIYGAARLFLFNNATEAGVTASLKVWQMNSAFIRPYPNL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12240		ATBETAFRUCT4, V...	VACUOLAR INVERTASE, Glycosyl h...		Lus10028922 [exp]	0	1
AT4G22600			unknown protein		Lus10028923 [exp]	1.0	0.9331
AT4G14380			unknown protein		Lus10021182 [exp]	1.7	0.9107
AT1G63850			BTB/POZ domain-containing prot...		Lus10028772 [exp]	5.3	0.9162
AT2G48010		RKF3	receptor-like kinase in in flo...		Lus10027971 [exp]	11.0	0.8422
AT3G63470		SCPL40	serine carboxypeptidase-like 4...		Lus10005327 [exp]	11.7	0.8991
AT4G15800		RALFL33	ralf-like 33 (.1)		Lus10020647 [exp]	12.2	0.8228
AT2G29390		ATSMO2-2, SMO2-...	Arabidopsis thaliana sterol 4-...		Lus10040739 [exp]	13.0	0.8665
AT5G12250		TUB6	beta-6 tubulin (.1)		Lus10026813 [exp]	14.1	0.8592
AT4G36750			Quinone reductase family prote...		Lus10040486 [exp]	14.5	0.8673
AT2G44740		CYCP4;1	cyclin p4;1 (.1)		Lus10043003 [exp]	17.0	0.8955

Compare expression of checked genes

Lus10028922 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.