Plant FIBer expression Database

Lus10028923 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G22600 201 / 1e-63 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10015276
[exp]
42 / 0.0003 AT4G18690 204 / 6e-65 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G120700
[exp]
233 / 4e-76 AT4G22600 228 / 4e-74 unknown protein
PFAM info
Representative CDS sequence
>Lus10028923 pacid=23177107 polypeptide=Lus10028923 locus=Lus10028923.g ID=Lus10028923.BGIv1.0 annot-version=v1.0
ATGCCAAAAATCTCCTTCCCAAACCCCTTCTACTCTTCCTCCACCACCGCCAAGAAACTAACTCCGGCCACCGTGCTCTTCCAAGACTACTACAAACAGT
GGTTCAAGACCCTCAAATCAGCCCTCCTACCACTAATCCACCGCTCCCTCTCCGACCCATCCCCTCCGGCGCTCCTCTCCTCCCACGTCCAGCTCCTCCT
CCACCACTTCCTCTCCTACTACGACGCTCTCGACCTCGCCGCCACCGTCTCCGCCGCCGACAACCTCCCCCACCTCCTCCACCCATCCTGGCGCAACCCG
CTCGAGCTCCCCTTCCTCTTCCTCGGCGACCTCCACCCTTACCTCCTCACCAACCTCCTCCGCAAATTCCTCTCCGAAGCAGACAACGATGACAACAACG
ACAGCGAACAGCCAGGGCTGCTGGGTATGGCGTGGAAAGACCCTTCCGACAGATTGACGGTCAAGATCGAGCAGATCGAGCGCGGGCTAAGGCTGATCGT
GCCGTCCTTCTCGGAGAGGATGAAGAAGGCTCAGTCTGAGTTTATGAGGAGAGTCGCCGGAGCGGCGGCGGATGAGGAGCAAAAGAAGAGCGAGGCGGTG
GTTGGGGAAGCGATGAAGGCGGAGATGGATGAGATGGTGAGCATTTTCGTGGACGCCAATCGTCTGAGGAGGAGCGTGATATCGGAGATCGTTGGGACAC
TGGACCTTTACCAGGGTGCTCTGTTTCTTGAAGGATTGACTCTGTTTCTTGTTGGGTTCAGGGAGCCTGCTCTGGTGAAGAAGTTTAAACGGCACCGGAT
TGAGACCAACGACGAGGATGACGCGACCGGAGGATTTGTTGATGCGCGAGGGGATCTTACTTGA
AA sequence
>Lus10028923 pacid=23177107 polypeptide=Lus10028923 locus=Lus10028923.g ID=Lus10028923.BGIv1.0 annot-version=v1.0
MPKISFPNPFYSSSTTAKKLTPATVLFQDYYKQWFKTLKSALLPLIHRSLSDPSPPALLSSHVQLLLHHFLSYYDALDLAATVSAADNLPHLLHPSWRNP
LELPFLFLGDLHPYLLTNLLRKFLSEADNDDNNDSEQPGLLGMAWKDPSDRLTVKIEQIERGLRLIVPSFSERMKKAQSEFMRRVAGAAADEEQKKSEAV
VGEAMKAEMDEMVSIFVDANRLRRSVISEIVGTLDLYQGALFLEGLTLFLVGFREPALVKKFKRHRIETNDEDDATGGFVDARGDLT

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G22600 unknown protein Lus10028923
[exp]
0 1
AT1G12240 ATBETAFRUCT4, V... VACUOLAR INVERTASE, Glycosyl h... Lus10028922
[exp]
1.0 0.9331
AT4G14380 unknown protein Lus10021182
[exp]
2.0 0.8965
AT5G25450 Cytochrome bd ubiquinol oxidas... Lus10013113
[exp]
6.3 0.8643
AT5G37060 ATCHX24 cation/H+ exchanger 24, ARABID... Lus10026398
[exp]
16.0 0.8502
AT4G09600 GASA3 GAST1 protein homolog 3 (.1) Lus10025962
[exp]
16.1 0.8707
AT2G36830 TIP1;1, GAMMA-T... TONOPLAST INTRINSIC PROTEIN 1;... Lus10021510
[exp]
16.2 0.8157
AT4G14380 unknown protein Lus10011818
[exp]
17.7 0.8228
AT1G63850 BTB/POZ domain-containing prot... Lus10028772
[exp]
19.1 0.8687
AT1G67570 Protein of unknown function (D... Lus10043011
[exp]
20.1 0.8305
AT3G23730 XTH16 xyloglucan endotransglucosylas... Lus10003048
[exp]
20.2 0.8606

Lus10028923 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.