Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22580 575 / 0 Exostosin family protein (.1) AT4G13990 290 / 1e-92 Exostosin family protein (.1) AT2G32750 284 / 3e-90 Exostosin family protein (.1) AT2G29040 285 / 2e-88 Exostosin family protein (.1) AT2G31990 273 / 1e-86 Exostosin family protein (.1) AT2G32740 262 / 3e-82 ATGT13 ARABIDOPSIS GALACTOSYLTRANSFERASE 13, galactosyltransferase 13 (.1) AT2G20370 263 / 6e-81 AtMUR3, MUR3, KAM1 MURUS 3, KATAMARI 1, Exostosin family protein (.1) AT5G41250 246 / 5e-75 Exostosin family protein (.1) AT1G63450 247 / 2e-74 RHS8 root hair specific 8 (.1) AT5G62220 239 / 3e-73 ATGT18 glycosyltransferase 18 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004341 [exp] 880 / 0 AT4G22580 567 / 0.0 Exostosin family protein (.1) Lus10006694 [exp] 288 / 3e-91 AT4G13990 617 / 0.0 Exostosin family protein (.1) Lus10010677 [exp] 282 / 1e-89 AT2G32750 497 / 7e-173 Exostosin family protein (.1) Lus10001028 [exp] 275 / 9e-87 AT4G13990 499 / 1e-173 Exostosin family protein (.1) Lus10007426 [exp] 275 / 1e-86 AT2G32750 505 / 5e-176 Exostosin family protein (.1) Lus10016532 [exp] 273 / 4e-86 AT2G29040 546 / 0.0 Exostosin family protein (.1) Lus10004967 [exp] 275 / 7e-86 AT2G29040 573 / 0.0 Exostosin family protein (.1) Lus10001578 [exp] 273 / 3e-85 AT2G29040 566 / 0.0 Exostosin family protein (.1) Lus10024961 [exp] 264 / 2e-81 AT2G20370 959 / 0.0 MURUS 3, KATAMARI 1, Exostosin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G112200 [exp] 665 / 0 AT4G22580 583 / 0.0 Exostosin family protein (.1) Potri.001G120800 [exp] 654 / 0 AT4G22580 593 / 0.0 Exostosin family protein (.1) Potri.014G147800 [exp] 289 / 8e-92 AT4G13990 534 / 0.0 Exostosin family protein (.1) Potri.009G032500 [exp] 285 / 7e-89 AT2G29040 588 / 0.0 Exostosin family protein (.1) Potri.001G321000 [exp] 271 / 6e-85 AT4G13990 660 / 0.0 Exostosin family protein (.1) Potri.002G256200 [exp] 262 / 6e-81 AT2G20370 964 / 0.0 MURUS 3, KATAMARI 1, Exostosin family protein (.1) Potri.001G105300 [exp] 255 / 2e-78 AT1G63450 653 / 0.0 root hair specific 8 (.1) Potri.015G132600 [exp] 236 / 5e-72 AT5G62220 619 / 0.0 glycosyltransferase 18 (.1) Potri.001G382200 [exp] 231 / 2e-70 AT1G68470 530 / 0.0 Exostosin family protein (.1) Potri.012G130700 [exp] 229 / 3e-69 AT5G62220 626 / 0.0 glycosyltransferase 18 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [flax] [poplar] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Lus10028924 pacid=23177247 polypeptide=Lus10028924 locus=Lus10028924.g ID=Lus10028924.BGIv1.0 annot-version=v1.0 ATGGCGTCCATACGCATTTCCCTTCTTCCTCTTCTGTTCATCTTCATCCTCCTATCCCTTTCATTCAATCCGGCCATCTCCCAGGAATCATCCAAGTCCA GAAAAGAACGAGCCGGATCATCTTCAGACTCAAAAGCCCATTCATCCCCGCCGCCCGACTGCACGAACCGTTGGATCCACATCCGGCGGCTACCAACAAG ATTCAACATCGATCTCCTCGCCAACTGCTCCGTCTACGGCGACCTCTTCTACGACTTCTGCCCTTACCTTTCCAACCACGGCCTCGGACCCAAAACCCAC AACCGATCCCACTCATGGTATCGAACCGACCCGTTCCTCCTCGAGCTCACTTTCCACCGCCGGATGCTCGAGTACCCGTGTCTAACCCCCGACCCGAATC AGGCCGACGCCGTCTATCTACCCTACTACGCGGCAATCGATTCCCTAAGGTATCTCTACGGCCCCGAGGTTAACAATAGTATGGACCACGGATTGGATCT GTTCGAGTTCTTGCAGGAGAACGAGGGGTGGATCTGGGGCAAGAATTATGGATCGGATCATTTTCTAGTGATGGCCCGACCCGCCTGGGATTTCTCCCAG CCGCCGGATCTTGATCCGCCCGTTTGGGGGACTTCGTTCTTGGAACTCCCCGAGTTCTACAATCTGACGGCGTTGGTGGTTGAGTCGAGGTTGTGGGCTG GGCAAGAACAGGCGATTCCTTATCTGACGTCGTTTCATCCTCCCAATTTGGAGCTCTTGAATTCCTGGATCAATCGGGTCAAGGCTTCCAGGAGGACTTC GTTGATGCTGTTCGCCGGCGGAGGAGGGGTGTCGGCTCAGGCCAATATACGGAGGAGCATTAGGGATGAGTGTGAGAATAGTAGTAGTGAGGCGTTCGAG AGCAATGGTGGGTGGTACTATTACTCGAAAGTGTGCAACATTGTTGATTGCTCGAACGGGAAATGCGGGCACGACCCGATCTTATACATGAGGCCGATGT TGCAGTCCACGTTCTGCTTGCAGCCTCCGGGGGATACGCCGACAAGAAGGTCGACGTTTGACGCGATAATCGCTGGGTGCATACCGGTGTTCTTCGAGGA TCAATCAGCGAGAATGCAGTACGGGTGGCACTTGCCGGAGGAGGAGTATGGGGAGTTTGCAGTTCATATTCAGAAGGAGGATGTGGTGAATAAAGGGTTG AAGATTTTGGATGTGTTGATGGGGATTCCTAGGGCTAGAGTTAGGAGGATGAGACAGAAAGTTATTGAGTTGATCCCAAAGATTGTTTACAGGAAGCATG GAAGTTCAGCTGAGTTGAGAGCTCACAAGGATGCTTTTGATATTGCAATTGATGGAGCTCTGGAGATGATTAGGTCTAGGGTCAAAGGTGAAGACTTTTC TGGTATGATCATGAAATAA
AA sequence Show only first row Show all	>Lus10028924 pacid=23177247 polypeptide=Lus10028924 locus=Lus10028924.g ID=Lus10028924.BGIv1.0 annot-version=v1.0 MASIRISLLPLLFIFILLSLSFNPAISQESSKSRKERAGSSSDSKAHSSPPPDCTNRWIHIRRLPTRFNIDLLANCSVYGDLFYDFCPYLSNHGLGPKTH NRSHSWYRTDPFLLELTFHRRMLEYPCLTPDPNQADAVYLPYYAAIDSLRYLYGPEVNNSMDHGLDLFEFLQENEGWIWGKNYGSDHFLVMARPAWDFSQ PPDLDPPVWGTSFLELPEFYNLTALVVESRLWAGQEQAIPYLTSFHPPNLELLNSWINRVKASRRTSLMLFAGGGGVSAQANIRRSIRDECENSSSEAFE SNGGWYYYSKVCNIVDCSNGKCGHDPILYMRPMLQSTFCLQPPGDTPTRRSTFDAIIAGCIPVFFEDQSARMQYGWHLPEEEYGEFAVHIQKEDVVNKGL KILDVLMGIPRARVRRMRQKVIELIPKIVYRKHGSSAELRAHKDAFDIAIDGALEMIRSRVKGEDFSGMIMK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G22580			Exostosin family protein (.1)		Lus10028924 [exp]	0	1
AT5G18520			Lung seven transmembrane recep...		Lus10009065 [exp]	1.4	0.9626
AT2G37110			PLAC8 family protein (.1)		Lus10019922 [exp]	2.0	0.9334
AT2G18840			Integral membrane Yip1 family ...		Lus10006966 [exp]	3.5	0.9332
AT1G27970		NTF2B	nuclear transport factor 2B (....		Lus10037033 [exp]	4.2	0.8987
AT2G27030		CAM5, CAM2, ACA...	calmodulin 5 (.1.2.3)		Lus10037423 [exp]	4.5	0.9115
AT5G42090			Lung seven transmembrane recep...		Lus10033235 [exp]	5.9	0.9291
AT2G18840			Integral membrane Yip1 family ...		Lus10025478 [exp]	6.6	0.9292
AT5G42090			Lung seven transmembrane recep...		Lus10008267 [exp]	6.9	0.9209
AT1G29790			S-adenosyl-L-methionine-depend...		Lus10025384 [exp]	7.3	0.9128
AT3G48680		AtCAL2, GAMMACA...	gamma carbonic anhydrase-like ...		Lus10031845 [exp]	8.0	0.9129

Compare expression of checked genes

Lus10028924 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.