Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62640 573 / 0 KAS III, KASIII 3-ketoacyl-acyl carrier protein synthase III (.1.2) AT1G71160 45 / 7e-05 KCS7 3-ketoacyl-CoA synthase 7 (.1) AT2G26640 43 / 0.0003 KCS11 3-ketoacyl-CoA synthase 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004342 [exp] 716 / 0 AT1G62640 582 / 0.0 3-ketoacyl-acyl carrier protein synthase III (.1.2) Lus10024608 [exp] 621 / 0 AT1G62640 585 / 0.0 3-ketoacyl-acyl carrier protein synthase III (.1.2) Lus10032246 [exp] 620 / 0 AT1G62640 581 / 0.0 3-ketoacyl-acyl carrier protein synthase III (.1.2) Lus10020662 [exp] 46 / 5e-05 AT1G71160 470 / 6e-164 3-ketoacyl-CoA synthase 7 (.1) Lus10043300 [exp] 44 / 0.0002 AT2G26640 897 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Lus10019446 [exp] 44 / 0.0003 AT2G26640 897 / 0.0 3-ketoacyl-CoA synthase 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G120900 [exp] 605 / 0 AT1G62640 632 / 0.0 3-ketoacyl-acyl carrier protein synthase III (.1.2) Potri.003G112101 [exp] 126 / 1e-34 AT1G62640 132 / 4e-37 3-ketoacyl-acyl carrier protein synthase III (.1.2) Potri.010G080200 [exp] 54 / 8e-08 AT2G26640 759 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G080400 [exp] 54 / 1e-07 AT2G26640 759 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G079500 [exp] 53 / 2e-07 AT2G26640 758 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G080000 [exp] 52 / 3e-07 AT2G26640 573 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G079700 [exp] 52 / 5e-07 AT2G26640 756 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.018G032200 [exp] 42 / 0.0007 AT2G26640 867 / 0.0 3-ketoacyl-CoA synthase 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0046 [flax] [poplar] Thiolase PF08545 [flax] [poplar] ACP_syn_III 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CL0046 [flax] [poplar] Thiolase PF08541 [flax] [poplar] ACP_syn_III_C 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
Representative CDS sequence Show only first row Show all	>Lus10028925 pacid=23177217 polypeptide=Lus10028925 locus=Lus10028925.g ID=Lus10028925.BGIv1.0 annot-version=v1.0 ATGGCCAATGTGTCTAGTTTCGTTGGTCCTTCGGTTCCAGGCTTGGGAAGGAAGATGAAGCCTTGTATAGGTATCAGTGGATCTGGGTTTAGCTCTATTA AGGGATTCCGAAAGGGAGTGGTTTTCTGCTCCAGCGCTGTTGAAGGTTCTGACAAGAAGACTTCCCCTTCTGAAGCTCGAATGCCTAGGCTTGTTAGTCA AGGCTGCAAACTTATAGGATGCGGCTCAGCAGTTCCACAACTTCAGATATCAAATGATGATCTTGCTAAACTGGTTGACACTAATGATAAGTGGATATCA GATCGTACAGGGATTCATAATCGAAGAGTTCTTACAGGAAAAGAAACCCTGGTCTCTTTAGCAGCAGAATCAGCAAGGAAAGCACTAGAGATGGCAAAGG TTGATCCTGATGATCTGGATATGATCTTGTTGTGCACATCTACACCAGACGATCTTTTCAGCAGTGCTCCTCAGATTCAAAAGCAGCTTGGATGCAAAGG AAATCCTTTGGCATATGACATAACAGCTGCATGTAGTGGATTCCTTTTGGGGTTGATTTCTGCTTCTTGTCACATTAGGGGAGGTGGATTTAAAAATGTT TTAGTCATTGGTGCTGACGCCATTTCGCGATATGTGAACTGGACTGATAGAGGATCTTGTATACTCTTCGGCGATGCTGCTGGTGCTGTTTTGGTACAGG CCTGTGACGGTGAGGATGATGGTTTGTTTAGTTTTGACCTGCATAGTGATGGTGACGGCCAGAGACATTTAAACGCGTCGATCCACCAAAACAAACCGGA TGATGCATTAGGTTCTAACGGATCGGGTCTAGACTTCCCTCCAAGACACTCCTCATATTCATGCATAACCATGAATGGGAAAGAGGTTTATCGCTTTGCT GTACAATGTGTGCCAGAGACCATAGAATCGTCCCTTGAAAAGGCCGGTATAACTGCAGCTGACATAGATTGGTTGCTACTGCACCAGGCGAACAAAAGGA TCATCGATTCAGTAGCAGATCGTCTGAACCTTCCATCCGAAAGGGTGATATCGAATCTGGCAAATTACGGCAACACAAGTGCAGCTTCCATTCCCTTGGC ATTGGATGAAGCTGTACGAAGTGGCAAGGTGAAGCCAGGCCATAAAATTGCAGCAGCTGGATTCGGAGCTGGTCTAACTTGGGGTTCTGCAATCATCAGA TGGGGTTGA
AA sequence Show only first row Show all	>Lus10028925 pacid=23177217 polypeptide=Lus10028925 locus=Lus10028925.g ID=Lus10028925.BGIv1.0 annot-version=v1.0 MANVSSFVGPSVPGLGRKMKPCIGISGSGFSSIKGFRKGVVFCSSAVEGSDKKTSPSEARMPRLVSQGCKLIGCGSAVPQLQISNDDLAKLVDTNDKWIS DRTGIHNRRVLTGKETLVSLAAESARKALEMAKVDPDDLDMILLCTSTPDDLFSSAPQIQKQLGCKGNPLAYDITAACSGFLLGLISASCHIRGGGFKNV LVIGADAISRYVNWTDRGSCILFGDAAGAVLVQACDGEDDGLFSFDLHSDGDGQRHLNASIHQNKPDDALGSNGSGLDFPPRHSSYSCITMNGKEVYRFA VQCVPETIESSLEKAGITAADIDWLLLHQANKRIIDSVADRLNLPSERVISNLANYGNTSAASIPLALDEAVRSGKVKPGHKIAAAGFGAGLTWGSAIIR WG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G62640		KAS III, KASIII	3-ketoacyl-acyl carrier protei...		Lus10028925 [exp]	0	1
AT5G10480		PEP, PAS2	PEPINO, PASTICCINO 2, Protein-...		Lus10024408 [exp]	1.0	0.9000
AT1G62640		KAS III, KASIII	3-ketoacyl-acyl carrier protei...		Lus10004342 [exp]	3.0	0.8344
AT5G51140			Pseudouridine synthase family ...		Lus10022437 [exp]	4.9	0.8656
AT3G06350		EMB3004, MEE32	MATERNAL EFFECT EMBRYO ARREST ...		Lus10005928 [exp]	6.6	0.8333
AT1G12330			unknown protein		Lus10024559 [exp]	7.9	0.8403
AT3G48820			Glycosyltransferase family 29 ...		Lus10043193 [exp]	9.4	0.8130
AT2G24800			Peroxidase superfamily protein...		Lus10026903 [exp]	10.6	0.8462
AT5G54010			UDP-Glycosyltransferase superf...		Lus10013337 [exp]	15.1	0.8560
AT5G10730			NAD(P)-binding Rossmann-fold s...		Lus10037306 [exp]	16.9	0.7929
AT5G63900			Acyl-CoA N-acyltransferase wit...		Lus10000368 [exp]	20.0	0.8403

Compare expression of checked genes

Lus10028925 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.