Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26330 334 / 1e-108 CYP71B37 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) AT3G26320 331 / 2e-107 CYP71B36 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) AT5G25140 330 / 2e-107 CYP71B13 "cytochrome P450, family 71, subfamily B, polypeptide 13", cytochrome P450, family 71, subfamily B, polypeptide 13 (.1) AT5G25180 330 / 4e-107 CYP71B14 "cytochrome P450, family 71, subfamily B, polypeptide 14", cytochrome P450, family 71, subfamily B, polypeptide 14 (.1) AT5G25130 327 / 5e-106 CYP71B12 "cytochrome P450, family 71, subfamily B, polypeptide 12", cytochrome P450, family 71, subfamily B, polypeptide 12 (.1) AT1G13080 327 / 9e-106 CYP71B2 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2) AT5G25120 325 / 3e-105 CYP71B11 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) AT3G26310 322 / 3e-104 CYP71B35 "cytochrome P450, family 71, subfamily B, polypeptide 35", cytochrome P450, family 71, subfamily B, polypeptide 35 (.1) AT3G26300 322 / 4e-104 CYP71B34 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) AT3G26270 319 / 5e-103 CYP71B25 "cytochrome P450, family 71, subfamily B, polypeptide 25", cytochrome P450, family 71, subfamily B, polypeptide 25 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041667 [exp] 531 / 0 AT3G26300 375 / 3e-125 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Lus10002885 [exp] 483 / 3e-166 AT3G48280 396 / 2e-133 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10026252 [exp] 491 / 2e-164 AT5G25120 383 / 2e-123 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) Lus10012767 [exp] 472 / 2e-162 AT3G26210 386 / 1e-129 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) Lus10042815 [exp] 467 / 4e-160 AT1G13110 396 / 3e-133 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) Lus10030708 [exp] 458 / 5e-157 AT3G26210 390 / 6e-131 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) Lus10016601 [exp] 452 / 1e-154 AT3G26320 402 / 6e-136 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Lus10013194 [exp] 437 / 1e-148 AT5G25120 387 / 9e-130 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) Lus10018263 [exp] 436 / 8e-148 AT5G25140 393 / 5e-132 "cytochrome P450, family 71, subfamily B, polypeptide 13", cytochrome P450, family 71, subfamily B, polypeptide 13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G223500 [exp] 469 / 3e-161 AT3G26300 395 / 3e-133 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.011G130850 [exp] 456 / 5e-156 AT3G26300 361 / 5e-120 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G365100 [exp] 453 / 6e-155 AT3G26300 347 / 2e-114 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.011G130800 [exp] 451 / 4e-154 AT3G26300 359 / 4e-119 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G364600 [exp] 449 / 1e-153 AT5G25120 352 / 2e-116 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) Potri.007G074300 [exp] 439 / 1e-149 AT3G26300 343 / 6e-113 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074900 [exp] 438 / 3e-149 AT3G26300 383 / 3e-128 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G075000 [exp] 436 / 5e-148 AT3G26300 386 / 2e-129 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074850 [exp] 434 / 2e-147 AT3G26300 379 / 1e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G365300 [exp] 387 / 2e-130 AT3G26300 291 / 7e-94 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10028926 pacid=23177293 polypeptide=Lus10028926 locus=Lus10028926.g ID=Lus10028926.BGIv1.0 annot-version=v1.0 ATGGCTGCAGAGCAAGCTTGCTCACGCCATTTTCAATCTCTTCCTCTCAAACTTGATACCCACAAGAACAAGATCTCAGCAATCAATCAGTTAATGGCTT CCATCATCGCCACAACTAGTATGGCGGCCGTTGAGAATCAGTTCTCCGCCTCTCCCCTTTCCCTCCCTTTCCTCACCACACTCGCTATCGCTACCATCAT CATCATCACTTTGACACGCCGACTCACCGGCGGCGGCGGCACCAAGCATTTCCCCCCGGGACCGTGGCGACTCCCAATCATAGGGAATCTCCACCAGCTA GTCTCCACCCTACCCCACCGCCGCCTCCGCGAACTCGCCGTCAAATACGGCCCCGACGTCATGCACCTCCAACTCGGACAACTCTCCCACATAGTCATAT CCTCCTCACAAGCAGCCAAACAAGTGATGAAGACCCACGACGTCGTCTTCGCCTCCAGGCCGTCGCTTCTCGGCGCCGATCTAGTACTCTACGCCGGGAA CGACCTCGCGTTCACCGCTTACACTGAGAGGTACAAGCAGCTCCGCAAGATCTGCGTGGTGGAGCTGCTCGGGGCGAACCGGGTCAGGGGGTTCAGATCT ATCCGGGAGGACGAAGTCGGGAATCTGGTCAACGCTTTCTCCCAGAAGGCTGCGGCGGCGGAGGCCGCGGAGGTTAATATCAGCGAGGAGGTGTTCTGGC TGTCGACTCGGGTGACTAGTCGGACGGCGTTGGGGAAGGCGAGGGATCGAGATGATGGGTTACTCAAGATGGTCGGGGAGGTTTCTGATATTCTGGGTGG GTTTAGAGTTTCGGATCTTTTCCCTTCGTTCAAATTGATTCCGGTGGTGACTGGATTCAAGGCTAAACTCATCAGGATGCACAAAAGTCTGGATTCGATG CTTGACGATATCATTAATGAGCATAAGGTGAAAAATTCCGGTGAAAGGAAGGATGATGATGATCTCGTCACTGTTTTACTTCATCTTCAGAAAGACGGAA CCCAGCAGTTCAATTTGACTGTGGAGAACATCAAAGCAGTCACCGTGGAAATGTTCATTGCTGGTGTGGAAACGTCAGCCACAGCAATAGACTGGACAAT GGCTGAAATGATGAGAGACAAGAGAGTACTGCAAAAGGCACAAGAAGAAGTTAGACGAGTGTACTCTGGGAAAGCCACTGTGGATGAAGCAATCATCCAT GAATTGACATATTTGGACTTGGTTATTAAAGAAAGTTTAAGGCTACACCCGCCGCTGCCTTTGCTCCTCCCTAGACAGAGCAGCGAGACGGTCGAAATTG ACGGGTATGAGATCCCAGCCAACACCAAAGTCATTATCAACGGTTGGGCGATTGGAAGAGATGCTCGTTACTGGGACGAGCCTGACAAATTCTATCCCGA AAGGTTTCTAGACCGTTCGATTGACGACAAGGGTATGGATTTCGAGCTTCTTCCGTTTGGGTCTGGAAGAAGGATGTGTCCTGGAATGCTCTACGCATCG GCTGTTGTCAAGCTTGTGCTTGCTAACTTGCTTTATCATTTTGATTGGAAGCTCCCCGGTGGGATGAAGCCTGAAGATTTGGACATGACGGAGGCATTCG GGGCTTCAGTCCGACGAAAATGTGGGTTGTCGTTGATCCCAGTGAAGAGCAATGTCGTGAAATCTTGA
AA sequence Show only first row Show all	>Lus10028926 pacid=23177293 polypeptide=Lus10028926 locus=Lus10028926.g ID=Lus10028926.BGIv1.0 annot-version=v1.0 MAAEQACSRHFQSLPLKLDTHKNKISAINQLMASIIATTSMAAVENQFSASPLSLPFLTTLAIATIIIITLTRRLTGGGGTKHFPPGPWRLPIIGNLHQL VSTLPHRRLRELAVKYGPDVMHLQLGQLSHIVISSSQAAKQVMKTHDVVFASRPSLLGADLVLYAGNDLAFTAYTERYKQLRKICVVELLGANRVRGFRS IREDEVGNLVNAFSQKAAAAEAAEVNISEEVFWLSTRVTSRTALGKARDRDDGLLKMVGEVSDILGGFRVSDLFPSFKLIPVVTGFKAKLIRMHKSLDSM LDDIINEHKVKNSGERKDDDDLVTVLLHLQKDGTQQFNLTVENIKAVTVEMFIAGVETSATAIDWTMAEMMRDKRVLQKAQEEVRRVYSGKATVDEAIIH ELTYLDLVIKESLRLHPPLPLLLPRQSSETVEIDGYEIPANTKVIINGWAIGRDARYWDEPDKFYPERFLDRSIDDKGMDFELLPFGSGRRMCPGMLYAS AVVKLVLANLLYHFDWKLPGGMKPEDLDMTEAFGASVRRKCGLSLIPVKSNVVKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Lus10028926 [exp]	0	1
AT3G28040			Leucine-rich receptor-like pro...		Lus10037276 [exp]	3.9	0.8814
AT1G54690		HTA3 ,G-H2AX ,G...	histone H2A 3, GAMMA H2AX, gam...		Lus10000929 [exp]	4.9	0.8685
AT5G05780		RPN8A, AE3, ATH...	ASYMMETRIC LEAVES ENHANCER 3, ...		Lus10027775 [exp]	6.2	0.8790
AT5G49665			Zinc finger (C3HC4-type RING f...		Lus10028223 [exp]	10.8	0.8744
AT5G49100			unknown protein		Lus10037496 [exp]	13.4	0.8708
AT5G26230		MAKR1	membrane-associated kinase reg...		Lus10041214 [exp]	13.4	0.8555
AT1G73600			S-adenosyl-L-methionine-depend...		Lus10009056 [exp]	14.1	0.8554
AT5G63770		ATDGK2	diacylglycerol kinase 2 (.1.2)		Lus10010896 [exp]	14.1	0.8440
AT3G60660			unknown protein		Lus10010359 [exp]	14.7	0.8693
AT1G78650		POLD3	DNA-directed DNA polymerases (...		Lus10013748 [exp]	19.1	0.8514

Compare expression of checked genes

Lus10028926 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.