Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22560 219 / 9e-71 unknown protein AT1G62520 216 / 2e-69 unknown protein AT4G12450 209 / 9e-67 unknown protein AT2G29660 115 / 2e-29 C2H2ZnF zinc finger (C2H2 type) family protein (.1) AT1G75710 102 / 1e-24 C2H2ZnF C2H2-like zinc finger protein (.1) AT4G27240 100 / 5e-24 C2H2ZnF zinc finger (C2H2 type) family protein (.1) AT5G54630 99 / 3e-23 C2H2ZnF zinc finger protein-related (.1) AT1G11490 73 / 2e-14 C2H2ZnF zinc finger (C2H2 type) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032250 [exp] 265 / 4e-88 AT1G62520 246 / 2e-81 unknown protein Lus10033148 [exp] 120 / 4e-31 AT1G75710 442 / 3e-153 C2H2-like zinc finger protein (.1) Lus10034522 [exp] 118 / 2e-30 AT1G75710 450 / 1e-156 C2H2-like zinc finger protein (.1) Lus10024333 [exp] 111 / 6e-29 AT1G75710 384 / 3e-133 C2H2-like zinc finger protein (.1) Lus10043080 [exp] 112 / 7e-28 AT5G54630 566 / 0.0 zinc finger protein-related (.1) Lus10018219 [exp] 103 / 5e-25 AT2G29660 323 / 4e-108 zinc finger (C2H2 type) family protein (.1) Lus10040685 [exp] 102 / 2e-24 AT2G29660 322 / 9e-108 zinc finger (C2H2 type) family protein (.1) Lus10025632 [exp] 100 / 9e-24 AT1G75710 284 / 2e-91 C2H2-like zinc finger protein (.1) Lus10007625 [exp] 96 / 4e-22 AT4G21320 400 / 6e-136 HEAT-STRESS-ASSOCIATED 32, Aldolase-type TIM barrel family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G121600 [exp] 314 / 1e-107 AT4G22560 258 / 5e-86 unknown protein Potri.003G111800 [exp] 306 / 6e-105 AT4G22560 263 / 3e-88 unknown protein Potri.005G238300 [exp] 113 / 9e-29 AT1G75710 478 / 5e-168 C2H2-like zinc finger protein (.1) Potri.001G249900 [exp] 112 / 2e-28 AT2G29660 351 / 1e-119 zinc finger (C2H2 type) family protein (.1) Potri.009G043900 [exp] 112 / 2e-28 AT2G29660 332 / 4e-112 zinc finger (C2H2 type) family protein (.1) Potri.011G131300 [exp] 105 / 8e-26 AT5G54630 509 / 3e-179 zinc finger protein-related (.1) Potri.005G173400 [exp] 105 / 1e-25 AT1G75710 291 / 3e-94 C2H2-like zinc finger protein (.1) Potri.002G023200 [exp] 104 / 2e-25 AT1G75710 439 / 1e-152 C2H2-like zinc finger protein (.1) Potri.002G087500 [exp] 102 / 1e-24 AT1G75710 294 / 2e-95 C2H2-like zinc finger protein (.1) Potri.001G415600 [exp] 101 / 4e-24 AT5G54630 520 / 0.0 zinc finger protein-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028927 pacid=23177254 polypeptide=Lus10028927 locus=Lus10028927.g ID=Lus10028927.BGIv1.0 annot-version=v1.0 ATGGCGACCGCCTGGGTGAAATCTCTTCAATGCAAATCCAGAGCCTACGACGACGTATTCAGCCCTTCTCCGCGAAGCCTCATCGCCAGCTCCAGCTGCC GACACAGCTCTAGAAACATCAAAGACGTCGTCGACTCTTCGTCCTCTTCGGCAGCCAACCACCACCGCCGCAAGCGCCCCAAATCCAGGTCTCACAAACC CAACCCCAACCCCAAGCCGAACTCTAGACCCGATTCGTTTCCAGCTCAACAGGCCCACCGTCATAGCCGTACGCAGAGCAACCCGGAAACGACGTCGCTC TACCCTGCCTTGACGGAACTTCCGGAGGGTCATCCGTCGAGGAACGTGGTGGAGATAATCTTCCAGTCCAGCTGGAGCGAGAGGTCGTTTTCGGGTCGGA TCGAGATGATTTTTAAAGTCCAGAACGGGTCTCGGACTTCAACCCGGTTCGAGGAGTACAGGGAAGTTGTTAAATCCCGGGCCGGATTTTCCGGAGGCGG GGGCACGTGGGAGGAGAGTGCAAGGTGCGTGGCGGACGGCAACGAGATGATGAGGTTCTACTGCCTGGGGCCGGCAGGGGGTGTCGGTGACGCGCGGGGA AGCGCTTGGATTTTCCCCGGAGGGAAAGGCTCGGCGATTTGCACGTTTTCCGGGAGCGGCGCGGCCCACGAGAGCGCCGGCGGAGGGAAGGGGAGGAGGG CTATGCTTGTTTGTCGGGTTGTAGCGGGTCGTGTGTGGAAGCAACTCGGGGTTGACTCGGTCGTGTCGGAGGATCGGGTCGGGTTTGACTCGGTGAGTGG GGAGCGAAACGGCGAGTTGCTGGTGTTTGATAATCGTGCTGTGTTGCCTTGCTTTCTTATTATCTATAAACTGTAA
AA sequence Show only first row Show all	>Lus10028927 pacid=23177254 polypeptide=Lus10028927 locus=Lus10028927.g ID=Lus10028927.BGIv1.0 annot-version=v1.0 MATAWVKSLQCKSRAYDDVFSPSPRSLIASSSCRHSSRNIKDVVDSSSSSAANHHRRKRPKSRSHKPNPNPKPNSRPDSFPAQQAHRHSRTQSNPETTSL YPALTELPEGHPSRNVVEIIFQSSWSERSFSGRIEMIFKVQNGSRTSTRFEEYREVVKSRAGFSGGGGTWEESARCVADGNEMMRFYCLGPAGGVGDARG SAWIFPGGKGSAICTFSGSGAAHESAGGGKGRRAMLVCRVVAGRVWKQLGVDSVVSEDRVGFDSVSGERNGELLVFDNRAVLPCFLIIYKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G22560			unknown protein		Lus10028927 [exp]	0	1
AT1G71740			unknown protein		Lus10041497 [exp]	1.0	0.9629
AT5G67020			unknown protein		Lus10019344 [exp]	2.0	0.9532
AT2G17840		ERD7	EARLY-RESPONSIVE TO DEHYDRATIO...		Lus10014132 [exp]	2.8	0.9344
AT4G32020			unknown protein		Lus10005344 [exp]	2.8	0.9435
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10025818 [exp]	3.0	0.9493
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10025819 [exp]	3.9	0.9400
AT5G57360		LKP1, FKL2, ADO...	ZEITLUPE, LOV KELCH PROTEIN 1,...		Lus10025470 [exp]	4.6	0.9368
AT1G01470		LSR3, LEA14	LIGHT STRESS-REGULATED 3, LATE...		Lus10007905 [exp]	5.5	0.9380
					Lus10020006 [exp]	7.1	0.9228
AT2G47450		CPSRP43, CAO	CHLOROPLAST SIGNAL RECOGNITION...		Lus10023973 [exp]	7.3	0.9104

Compare expression of checked genes

Lus10028927 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.