Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17260 72 / 6e-16 Lactate/malate dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004350 [exp] 132 / 4e-38 AT4G17260 550 / 0.0 Lactate/malate dehydrogenase family protein (.1) Lus10002983 [exp] 125 / 1e-37 AT4G17260 159 / 3e-48 Lactate/malate dehydrogenase family protein (.1) Lus10006030 [exp] 86 / 2e-20 AT4G17260 124 / 9e-32 Lactate/malate dehydrogenase family protein (.1) Lus10002982 [exp] 67 / 4e-15 AT4G17260 198 / 6e-64 Lactate/malate dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G135920 [exp] 92 / 1e-23 AT4G17260 372 / 1e-130 Lactate/malate dehydrogenase family protein (.1) Potri.001G122400 [exp] 93 / 2e-23 AT4G17260 545 / 0.0 Lactate/malate dehydrogenase family protein (.1) Potri.003G111201 [exp] 57 / 2e-10 AT4G17260 477 / 3e-171 Lactate/malate dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00056 [flax] [poplar] Ldh_1_N lactate/malate dehydrogenase, NAD binding domain
Representative CDS sequence Show only first row Show all	>Lus10028931 pacid=23177097 polypeptide=Lus10028931 locus=Lus10028931.g ID=Lus10028931.BGIv1.0 annot-version=v1.0 ATGCACAAAACGCCTTCAGGTTCATCGCTAGGCGGCCCCGACGGCCTAGACCTAACCCAAACATTTTTCAAACCCATCCAGAGAACCGACTCGCTCTACT CATCCAAGCGCTCCATCACCAAGATCTCCGTCATTGGCGTCGGCAACGTCGGTATGGCCATCGCCCAAACCATCCTCACCCAGGACCTTGCCGACGAGAT CGCTCTAGTCGACGCTAACGACGACAAGCTCCGCGGCGAGATGCTTGTCAAATCTTCAACTGGCTCTGAACCTCAATGCGTATCCAATGCTATCTGCTGC TGCTCCAAGAAGCTTATTATCGGCACTCCCCCAACGCTTATGCTCGACCACAGCGCCACCGAGCTGTCACCGTGCTCCCCCACTACGTACGCCTAA
AA sequence Show only first row Show all	>Lus10028931 pacid=23177097 polypeptide=Lus10028931 locus=Lus10028931.g ID=Lus10028931.BGIv1.0 annot-version=v1.0 MHKTPSGSSLGGPDGLDLTQTFFKPIQRTDSLYSSKRSITKISVIGVGNVGMAIAQTILTQDLADEIALVDANDDKLRGEMLVKSSTGSEPQCVSNAICC CSKKLIIGTPPTLMLDHSATELSPCSPTTYA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17260			Lactate/malate dehydrogenase f...		Lus10028931 [exp]	0	1
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10000843 [exp]	3.3	1.0000
AT5G12180		CPK17	calcium-dependent protein kina...		Lus10000889 [exp]	3.5	1.0000
AT1G66370	MYB	ATMYB113	myb domain protein 113 (.1)		Lus10003277 [exp]	3.9	1.0000
					Lus10005378 [exp]	4.0	1.0000
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10001774 [exp]	4.9	1.0000
					Lus10015823 [exp]	5.4	1.0000
					Lus10022529 [exp]	6.2	1.0000
AT2G47940		EMB3117, DEGP2	EMBRYO DEFECTIVE 3117, DEGP pr...		Lus10040905 [exp]	6.3	1.0000
AT3G49055			unknown protein		Lus10011651 [exp]	6.6	1.0000
AT2G38500			2-oxoglutarate (2OG) and Fe(II...		Lus10006093 [exp]	6.7	1.0000

Compare expression of checked genes

Lus10028931 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.