Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16515 43 / 4e-06 RGF6 root meristem growth factor 6, unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004351 [exp] 140 / 2e-43 ND 45 / 8e-07 Lus10008506 [exp] 49 / 4e-08 AT4G16515 47 / 2e-08 root meristem growth factor 6, unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G122600 [exp] 44 / 6e-06 AT4G16515 45 / 9e-07 root meristem growth factor 6, unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028932 pacid=23177311 polypeptide=Lus10028932 locus=Lus10028932.g ID=Lus10028932.BGIv1.0 annot-version=v1.0 ATGTCTCGAGTTCTGGCGTGGCTACTGCTCGTTTCTCTTTCGGTGCATGCATGCACTGCTCGGCAACTCATCACTCACGACCAAGCTAGTAGTGATGTTT CCGTTTTTAGTTCGGCGTCGTCGGAAGGCGAACCCCGAACACAAGTTGCAGAATGGACTTTGCTCGGTGCAATTACGTCCTGCATCAAGCACAGTCCTCT GAAGCAGGAGAAAGATGATAAAATAAAAGAGGGGATGAAGAAGACATGGAGAGGAAGAGGTCTAATGGCAGGGAAGAATATGAAGAAGAAGAAGAAGACG ACGGAGAAGAAGGAATCCAATGCTAGCGGAGACGAGGCAGAAAAAGAAGAAGGGAATACTAGTATTGTTATGATGGATTATGCTCAGCCCCATCGAAAGC CCCCGATCCACAACGAAAAACACTGA
AA sequence Show only first row Show all	>Lus10028932 pacid=23177311 polypeptide=Lus10028932 locus=Lus10028932.g ID=Lus10028932.BGIv1.0 annot-version=v1.0 MSRVLAWLLLVSLSVHACTARQLITHDQASSDVSVFSSASSEGEPRTQVAEWTLLGAITSCIKHSPLKQEKDDKIKEGMKKTWRGRGLMAGKNMKKKKKT TEKKESNASGDEAEKEEGNTSIVMMDYAQPHRKPPIHNEKH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10028932 [exp]	0	1
AT3G21720		ICL	isocitrate lyase (.1)		Lus10031552 [exp]	9.1	1.0000
AT4G34760			SAUR-like auxin-responsive pro...		Lus10028466 [exp]	10.5	0.9971
					Lus10025806 [exp]	13.0	1.0000
AT3G21720		ICL	isocitrate lyase (.1)		Lus10015122 [exp]	14.4	0.9979
AT1G02050		LAP6	LESS ADHESIVE POLLEN 6, Chalco...		Lus10002187 [exp]	15.3	0.9956
					Lus10026755 [exp]	15.9	1.0000
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10024627 [exp]	17.7	0.9978
AT4G17260			Lactate/malate dehydrogenase f...		Lus10028931 [exp]	18.3	1.0000
					Lus10039439 [exp]	19.0	0.9998
					Lus10010593 [exp]	19.3	0.9995

Compare expression of checked genes

Lus10028932 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.