Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17250 508 / 3e-172 unknown protein AT5G47580 468 / 7e-157 ASG7 ALTERED SEED GERMINATION 7, unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004355 [exp] 1197 / 0 AT4G17250 697 / 0.0 unknown protein Lus10000731 [exp] 642 / 0 AT4G17250 586 / 0.0 unknown protein Lus10008508 [exp] 628 / 0 AT4G17250 583 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G123100 [exp] 653 / 0 AT5G47580 725 / 0.0 ALTERED SEED GERMINATION 7, unknown protein Potri.003G110700 [exp] 632 / 0 AT5G47580 697 / 0.0 ALTERED SEED GERMINATION 7, unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028936 pacid=23177205 polypeptide=Lus10028936 locus=Lus10028936.g ID=Lus10028936.BGIv1.0 annot-version=v1.0 ATGGCCATCCAATTAGGCACAGGAGTTATCTACATCTGCTGGAGGGAGCACGCTGCTATCATGTCTCTTATGCTCGTGATGCTTGCGATTCTCGGTTTCT CTGCTTTAGCTGTCCCAGCAACTAAGAGCGAGTTGGAGTACAAGTACAAGAAGAGATGTGAGATGGCGCTGCACGAAGGGTCAAAAGATATGAACAAGAG ATCCCCGGAGGAGCTTAAGGAAGACCTAATGAAGTTCTGGATAATGGCACATACCAGCAATCCTCAATTCGTGATGGGGCGTTCGGTTACTTGTACAGCT TCAGGTGCACTGTGTCTCCTTGGGGCTACAATTCTAGCAGAGGCGATGTTCCGATCATTTCTTATGCCAGGAACCTTCAAGTTCTGTACAGGGGAGTCTG ACTACAGGTGGTCAACTGTTTTGGTTCTCATTGCGCAGACAGTTGCAGTTGGGGTTGGTTCTGTTGCCCCTGCAGTCAGGTGGTTCACTTCAGTGTATTT CAGGTGTCCTAGAACTGGGAAGAAAACCAGTAGAGGGACATACTTCAAGGTGGAGAAGTATTGGATTCAGTTTCTAGTGGAGACCAAAGAGTGTCCATTC ATACACATCAAAAGCCAGCATCTTAGGAAACTTGCACATGACATGAAGCACAGACTTCTGGAAACATGTATCCGAGCACAAATGGGAATCATAATAGGAT GCAAAGCTATTCAATACATATGCATCTTCTGTGCAGCCCGAGTCGAGCAGGTCTGCGTTTCCTGCAAAAAGTTAAGGAAGTCGTTACCAAGTAATAGCAT TTCCGTTGATCCGGGACTGGAAGTAACAAAAAAAATCGATCTAAGTCGCTTTGTTTTGCATCTTGAAGGCGAGGAAAACCTTGTGGAAGTGACTATGAGG AAGAATTGTACTGCCACAGATCACTGGATGCAAAAGGGCAGAAGGAGACAGCCTAAACTTCTGATAGAGCTATTGAGAAAAGCAAACTTTGCAGAAGGTT TTGACGGAGTAAGAGCATTTGACTGTGAGAAAATTTGCAGCTTGGAAGGTGAAGAACCTCCACATTGTTGGTCACTTCCTATAGTTACTTTGACAGCAAT TGCAGTTGCACTTCCGAATATCAGCAGCTGTTCTGTCAAACAATTGATACGGAGTGTACATGAGGGACTCATGTACGTCACCCTTATAGAAAAACACGAG GATGGAAAAGAAGAGCTAATAAATATTAGAAGAGCAGCTAACCATGTATGGTCCGGGGTCGACATTTACCATAAATGGTTAGATGTAGATCTTGCTAAGT TGTCCCTGAGAGCAGAAACCACAAGAGAAGTACTTGAAGGGCTTGCCGAAGCCGGGAAGAAGAGATTTGAAGACTTCAAGAAAGCGTACCCATCACAATG CATGAGGGAGAACCCTTCAGTGTGGCACCCAAAGTTATTGGCAGCTAATTCCATGTACAGAATAAGCAGCACAGTTCTGGAGAATTTCCACCGCGACAAC ACAGAATCGGGGGAGAGGTTATTTGGTACAATATCGATGCTGATCGCCGACATATTTGCTGCTTGTCTCACCAACCTGCGACCAGTGATCTTCTGCAAGT GTTTGAAGAGCACAATTGAAGACAGGAAAGGCAGTGTAAGGGAAGCAGTTTACCTCCTTGGCGAGATGGAAGAGATAGTTAAACTTCTAGACCGAAGTGC AGTGTCTGTTGTGTATCCAGACAAAATTACAAGCATTTCTCACTGGCATTCGTTCCAGAAATTGGATAAACCTCCGGCAATAGCTACACTGTCAACAATG GCCGATGCTTGTCTGTTGAGTTCAAAAGACCTCTGCCTAACCATTGAGTGA
AA sequence Show only first row Show all	>Lus10028936 pacid=23177205 polypeptide=Lus10028936 locus=Lus10028936.g ID=Lus10028936.BGIv1.0 annot-version=v1.0 MAIQLGTGVIYICWREHAAIMSLMLVMLAILGFSALAVPATKSELEYKYKKRCEMALHEGSKDMNKRSPEELKEDLMKFWIMAHTSNPQFVMGRSVTCTA SGALCLLGATILAEAMFRSFLMPGTFKFCTGESDYRWSTVLVLIAQTVAVGVGSVAPAVRWFTSVYFRCPRTGKKTSRGTYFKVEKYWIQFLVETKECPF IHIKSQHLRKLAHDMKHRLLETCIRAQMGIIIGCKAIQYICIFCAARVEQVCVSCKKLRKSLPSNSISVDPGLEVTKKIDLSRFVLHLEGEENLVEVTMR KNCTATDHWMQKGRRRQPKLLIELLRKANFAEGFDGVRAFDCEKICSLEGEEPPHCWSLPIVTLTAIAVALPNISSCSVKQLIRSVHEGLMYVTLIEKHE DGKEELINIRRAANHVWSGVDIYHKWLDVDLAKLSLRAETTREVLEGLAEAGKKRFEDFKKAYPSQCMRENPSVWHPKLLAANSMYRISSTVLENFHRDN TESGERLFGTISMLIADIFAACLTNLRPVIFCKCLKSTIEDRKGSVREAVYLLGEMEEIVKLLDRSAVSVVYPDKITSISHWHSFQKLDKPPAIATLSTM ADACLLSSKDLCLTIE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17250			unknown protein		Lus10028936 [exp]	0	1
AT4G36160	NAC	ANAC076, VND2	VASCULAR-RELATED NAC-DOMAIN 2,...		Lus10015312 [exp]	1.4	0.8944
AT4G16800			ATP-dependent caseinolytic (Cl...		Lus10010994 [exp]	3.9	0.8825
AT5G62740		AtHIR4, ATHIR1	hypersensitive induced reactio...		Lus10033099 [exp]	6.0	0.8897
					Lus10000816 [exp]	6.6	0.8355
AT3G66654			Cyclophilin-like peptidyl-prol...		Lus10004174 [exp]	7.3	0.8752
AT1G80570			RNI-like superfamily protein (...		Lus10002665 [exp]	7.5	0.8842
AT5G18610			Protein kinase superfamily pro...		Lus10023473 [exp]	12.0	0.8411
AT4G32440			Plant Tudor-like RNA-binding p...		Lus10014715 [exp]	13.0	0.8649
AT4G36195			Serine carboxypeptidase S28 fa...		Lus10028365 [exp]	17.2	0.8698
AT4G33430		SERK3, RKS10, E...	RECEPTOR KINASES LIKE SERK 10,...		Lus10025358 [exp]	20.2	0.8637

Compare expression of checked genes

Lus10028936 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.