Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45140 253 / 1e-81 PVA12 plant VAP homolog 12 (.1) AT3G60600 253 / 2e-81 (AT)VAP, (AT)VAP, (AT)VAP, (AT)VAP, (AT)VAP, (AT)VAP, (AT)VAP, VAP27-1, VAP27, (AT)VAP, (AT)VAP, (A VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1, vesicle associated protein (.1.2.3) AT4G00170 207 / 5e-64 Plant VAMP (vesicle-associated membrane protein) family protein (.1) AT2G23830 184 / 2e-56 PapD-like superfamily protein (.1) AT1G51270 170 / 2e-47 structural molecules;transmembrane receptors;structural molecules (.1.2.3.4) AT5G47180 146 / 5e-41 Plant VAMP (vesicle-associated membrane protein) family protein (.1), Plant VAMP (vesicle-associated membrane protein) family protein (.2) AT1G08820 148 / 9e-40 VAP27-2 vamp/synaptobrevin-associated protein 27-2 (.1.2) AT5G51440 105 / 4e-26 HSP20-like chaperones superfamily protein (.1) AT4G25200 101 / 1e-24 ATHSP23.6-MITO mitochondrion-localized small heat shock protein 23.6 (.1) AT4G27670 80 / 6e-17 HSP21 heat shock protein 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007463 [exp] 455 / 3e-160 AT3G60600 306 / 4e-105 VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1, vesicle associated protein (.1.2.3) Lus10008512 [exp] 333 / 1e-112 AT2G45140 296 / 7e-102 plant VAP homolog 12 (.1) Lus10015885 [exp] 233 / 7e-74 AT2G45140 307 / 2e-106 plant VAP homolog 12 (.1) Lus10010360 [exp] 233 / 1e-73 AT4G00170 311 / 5e-108 Plant VAMP (vesicle-associated membrane protein) family protein (.1) Lus10036495 [exp] 232 / 3e-73 AT4G00170 316 / 4e-110 Plant VAMP (vesicle-associated membrane protein) family protein (.1) Lus10009279 [exp] 235 / 4e-67 AT4G00060 1034 / 0.0 maternal effect embryo arrest 44, Nucleotidyltransferase family protein (.1) Lus10000032 [exp] 155 / 2e-45 AT2G45140 148 / 7e-46 plant VAP homolog 12 (.1) Lus10033837 [exp] 154 / 4e-41 AT1G08820 256 / 2e-80 vamp/synaptobrevin-associated protein 27-2 (.1.2) Lus10000591 [exp] 138 / 1e-37 AT5G47180 277 / 5e-95 Plant VAMP (vesicle-associated membrane protein) family protein (.1), Plant VAMP (vesicle-associated membrane protein) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G076100 [exp] 288 / 2e-95 AT2G45140 262 / 1e-88 plant VAP homolog 12 (.1) Potri.001G152000 [exp] 283 / 3e-93 AT2G45140 296 / 6e-102 plant VAP homolog 12 (.1) Potri.014G060900 [exp] 259 / 5e-84 AT2G45140 328 / 9e-115 plant VAP homolog 12 (.1) Potri.002G144000 [exp] 243 / 2e-77 AT3G60600 298 / 1e-102 VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1, vesicle associated protein (.1.2.3) Potri.002G144800 [exp] 226 / 6e-71 AT4G00170 313 / 5e-109 Plant VAMP (vesicle-associated membrane protein) family protein (.1) Potri.013G031400 [exp] 155 / 1e-42 AT1G08820 273 / 5e-89 vamp/synaptobrevin-associated protein 27-2 (.1.2) Potri.005G044900 [exp] 151 / 4e-41 AT1G08820 261 / 4e-84 vamp/synaptobrevin-associated protein 27-2 (.1.2) Potri.003G082500 [exp] 140 / 2e-38 AT5G47180 281 / 1e-96 Plant VAMP (vesicle-associated membrane protein) family protein (.1), Plant VAMP (vesicle-associated membrane protein) family protein (.2) Potri.001G152100 [exp] 138 / 1e-37 AT5G47180 229 / 4e-76 Plant VAMP (vesicle-associated membrane protein) family protein (.1), Plant VAMP (vesicle-associated membrane protein) family protein (.2) Potri.003G076000 [exp] 132 / 7e-36 AT4G25200 130 / 7e-38 mitochondrion-localized small heat shock protein 23.6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0556 [flax] [poplar] PapD-like PF00635 [flax] [poplar] Motile_Sperm MSP (Major sperm protein) domain CL0190 [flax] [poplar] HSP20 PF00011 [flax] [poplar] HSP20 Hsp20/alpha crystallin family
Representative CDS sequence Show only first row Show all	>Lus10028937 pacid=23177256 polypeptide=Lus10028937 locus=Lus10028937.g ID=Lus10028937.BGIv1.0 annot-version=v1.0 ATGAGCACGGGGGAGCTCCTCACTATCGAACCTCTTGAACTCAAATTCCCATTTGAATTGAAGAAGCAGATCTCATGTTCCCTCCAGCTGTCCAATCAAA CCGATAGTCATGTGGCTTTCAAGGTCAAAACGACGAATCCGAAGAAGTACTGCGTTCGGCCAAACGCAGGGGTTGTTTTGCCTCGTTCAACATGTGACAT AATGGTAACAATGCAAGCACAAAAGGAAGCTCCTGCTGATATGCAATGCAAGGATAAGTTTCTGCTTCAGAGCGTAAAAGCTCCTGAAGGTTCATCTGCA AAGGATATCACTGCGGAGATGTTCAATAAGGAGGCGGGACATCTGGTGGAGGAAACTAAGTTGAGGGTTGTGTATGTTTCCCCACCTCAACCACCTTCGC CTGTTCCTGAAGGTTCGGAGGAGGGGTCTTCACCTCGCGGTTCTGTCTCAGATAATGGGCATGTGAACGGTGCCGAGTTTGCTGTTGCCTCAAAAGCATT TGTCCAACGGTTTGATACAGATGATAAGTCCCCAGAGGCTAAAGCTCTCATTACAAAGCTAACTGAAGAAAAGAACAGCGCCGTTCAGCTAAATAACAAG CTTCGTCAGGAATTAATGGTTAAGGCTGATGCTAAGAGGATGTCATATGTACTGGTGGAAATTGCAGGAAATGTTGAGGCGGGAGGGGAGCAAAAGCAGC GGAGGGGTGTCGCTGATGTTCGTGATCATTGTGGGATTACTGGGCATATTGATGGGATACCTCTTGAAGAAGACGTAAAGCAGCTCCGAACATGCGAAAC CCACCACGTTTCTGATTTCTCCCCCCACAATACTACAGACATGTCGTCGGCCATAGCTCTTAGATCTACTGGTTTTCCTTTTCCTGCCCGGTTCTTGTTC AAGGTAGCCCGCCGGTCAGCCTTGGCGGGGCTGGATGTCTGCCGCTCATTAAACACCAACACCCCTGGGTACGCCGGAGATGAAACGGACACAATCCAAC TCAACAACAACTACGACCGGAGCATTCCGGACAGTCGCTCCTCTGATAACGAGCTCGCCAGCCGACGGAGCTCTTGGGTTCCTAGCTTCTTTGGAGATTT GGTAATCGACCCATTTTCACCGACGAGGACGATAAGCCAGATGGTGGAGATGATGAACAACTTGGAAAGGAGGAGGGGGTTGAAGATGAAGGAGGATGAG AAGAATATGTATGTAATCATGGAGATGCCGGGTCTTGGCAAGGATGAAGTGAAGGTGTATGTGGAGGGTAACATGCTGGTGATGAGAGGAGAACAGGGAA AAATGGATGAAGAGAGGCAGAGTAATGATGGGAGGAGGTATTACAGTAGCAGAGTGGAGTTGCAGACGAGTGATTATAAAGTTGAGGAGATTAAGGCGGA GATGAAGAATGGTGTGTTGAGGGTTGTGGTGCCGAAGGTCGGTGGCGAGGAGGAGACTGGTAAGAAAGATGTCAAGGAGGTTCAGGTTGAGTAG
AA sequence Show only first row Show all	>Lus10028937 pacid=23177256 polypeptide=Lus10028937 locus=Lus10028937.g ID=Lus10028937.BGIv1.0 annot-version=v1.0 MSTGELLTIEPLELKFPFELKKQISCSLQLSNQTDSHVAFKVKTTNPKKYCVRPNAGVVLPRSTCDIMVTMQAQKEAPADMQCKDKFLLQSVKAPEGSSA KDITAEMFNKEAGHLVEETKLRVVYVSPPQPPSPVPEGSEEGSSPRGSVSDNGHVNGAEFAVASKAFVQRFDTDDKSPEAKALITKLTEEKNSAVQLNNK LRQELMVKADAKRMSYVLVEIAGNVEAGGEQKQRRGVADVRDHCGITGHIDGIPLEEDVKQLRTCETHHVSDFSPHNTTDMSSAIALRSTGFPFPARFLF KVARRSALAGLDVCRSLNTNTPGYAGDETDTIQLNNNYDRSIPDSRSSDNELASRRSSWVPSFFGDLVIDPFSPTRTISQMVEMMNNLERRRGLKMKEDE KNMYVIMEMPGLGKDEVKVYVEGNMLVMRGEQGKMDEERQSNDGRRYYSSRVELQTSDYKVEEIKAEMKNGVLRVVVPKVGGEEETGKKDVKEVQVE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G60600		(AT)VAP, (AT)VA...	VAMP/SYNAPTOBREVIN-ASSOCIATED ...		Lus10028937 [exp]	0	1
AT2G15790		CYP40, SQN	SQUINT, CYCLOPHILIN 40, peptid...		Lus10027924 [exp]	1.4	0.8783
AT4G19670			RING/U-box superfamily protein...		Lus10018293 [exp]	2.8	0.8646
AT4G10770		ATOPT7	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10003217 [exp]	3.5	0.8522
AT2G15860			unknown protein		Lus10021000 [exp]	4.6	0.8458
AT2G42590		GENERALREGULATO...	general regulatory factor 9 (....		Lus10017650 [exp]	6.3	0.8475
AT5G25900		ATKO1, CYP701A3...	CYTOCHROME P450 701 A3, ARABID...		Lus10032750 [exp]	7.7	0.8226
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Lus10039562 [exp]	8.1	0.8470
AT4G00950		MEE47	maternal effect embryo arrest ...		Lus10005972 [exp]	8.9	0.8224
AT3G15410			Leucine-rich repeat (LRR) fami...		Lus10032667 [exp]	10.8	0.8031
AT4G31860			Protein phosphatase 2C family ...		Lus10042416 [exp]	12.5	0.8499

Compare expression of checked genes

Lus10028937 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.