Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47510 372 / 1e-126 Sec14p-like phosphatidylinositol transfer family protein (.1) AT2G21540 307 / 4e-99 ATSFH3 SEC14-like 3 (.1.2.3) AT4G34580 303 / 9e-98 SRH1, COW1 SHORT ROOT HAIR 1, CAN OF WORMS1, Sec14p-like phosphatidylinositol transfer family protein (.1) AT2G18180 303 / 1e-97 Sec14p-like phosphatidylinositol transfer family protein (.1) AT4G36490 302 / 2e-97 ATSFH12 SEC14-like 12 (.1) AT4G39180 301 / 6e-97 ATSEC14, SEC14 ARABIDOPSIS THALIANA SECRETION 14, Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT4G39170 293 / 5e-93 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G19650 291 / 3e-92 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT2G21520 287 / 2e-90 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G75370 286 / 2e-90 Sec14p-like phosphatidylinositol transfer family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007464 [exp] 679 / 0 AT5G47510 421 / 5e-146 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10041779 [exp] 287 / 2e-91 AT2G18180 645 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10025988 [exp] 288 / 7e-91 AT2G18180 662 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10040431 [exp] 286 / 2e-90 AT2G21520 921 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10040432 [exp] 286 / 4e-90 AT2G21540 679 / 0.0 SEC14-like 3 (.1.2.3) Lus10028332 [exp] 285 / 5e-90 AT2G18180 657 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10026356 [exp] 286 / 1e-89 AT2G21520 925 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10042302 [exp] 285 / 2e-89 AT2G21520 910 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10023547 [exp] 281 / 5e-89 AT2G21540 664 / 0.0 SEC14-like 3 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G076200 [exp] 455 / 2e-158 AT5G47510 397 / 1e-136 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.001G158700 [exp] 454 / 8e-158 AT5G47510 421 / 2e-145 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.009G119400 [exp] 303 / 3e-97 AT2G21540 729 / 0.0 SEC14-like 3 (.1.2.3) Potri.004G157600 [exp] 300 / 3e-96 AT2G21540 709 / 0.0 SEC14-like 3 (.1.2.3) Potri.007G020300 [exp] 299 / 4e-96 AT4G36490 731 / 0.0 SEC14-like 12 (.1) Potri.005G119700 [exp] 298 / 2e-95 AT4G36490 726 / 0.0 SEC14-like 12 (.1) Potri.002G032600 [exp] 293 / 6e-93 AT2G21520 731 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.004G157700 [exp] 290 / 6e-92 AT2G21520 908 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.009G119500 [exp] 290 / 1e-91 AT2G21520 975 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.005G230500 [exp] 284 / 3e-89 AT2G21520 756 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [flax] [poplar] UBA PF03765 [flax] [poplar] CRAL_TRIO_N CRAL/TRIO, N-terminal domain CL0512 [flax] [poplar] CRAL_TRIO PF00650 [flax] [poplar] CRAL_TRIO CRAL/TRIO domain
Representative CDS sequence Show only first row Show all	>Lus10028938 pacid=23177183 polypeptide=Lus10028938 locus=Lus10028938.g ID=Lus10028938.BGIv1.0 annot-version=v1.0 ATGTTCAGACAGAACCAGCAACCCAGAGACATCATAATATCAAGAGGAGGCAGTGGTATTGTATCCAAAGGAGGAAAGGCTAATAAGACCAAGAAGATCA TCCATCCACCGATCGAGTCTTATTGGCTTCTCCGTCCAATGAAAGCAGAGAAACACTCATCTTCGGCCCCCGCAGCCACCGTTTCGAGCATGGTGTCGTT GATCAAGAGGATTGGGAGGAGCAGAAGCTTGAACATGGCACTCGAAGGAGCTCACGACCCTAAAGATGAAGACGTCGTCAACTCTTTCCGTGAAGTTCTG TTCCTTGACGGTCATTTCCTTGGCAAACGGAATGACTATCACACCCTCTTGCGGTTTCTTCGGATGAGAGATTTTGATATTCCAAAGGCTAAGGACATGT TTGTGAATTATCTCAAGTGGCGGGAGGACTACAGAGTTGATGCCATTGCAAAGGAGTTTAAGTTGGAGGAGATTGGAGAGGTGAAGAAATGCTATCCTAA CGGGTACCATGGAGTAGACAGAGTTGGGAGACCAGTGTACATTGAAAGGCTAGGAATGGTGGACACCAATGGGTTGCTGGAAGTAACAACGTTAGACAGA CTTGTGAAGCACCATATATCTGAACAAGAAAAGACTATGAATTTAAGGTACCCTGCTTGTTCAATCGTCGCCAAGACTCATATAGCTTCAACAACCAGCA TTTTGGATGTCAAGGGAGTGGGAATATCAAGCTTCTCCAAGCCTGCTAGGTATCTGTTCATGGAGATCCAGAAGATTGACAGCAATTACTATCCAGAGAC GTTACATCGGCTGTACATAGTGAATGCTGGATCTGGGTTTAGAATGCTGTGGAAAGTACTCAAGCCATTTCTTGATGTCCGTACCTTGAAGAAGATTCAT GTGCTGGGAGAGAGCTACAGAAGTGAGCTCCTTGAAGCTGTTGATCCAAGTAACTTGCCAAGTTTTCTGGGAGGAAGCTGCAGCTGTTCGAGCTATGGTG GATGCTTATTCAGTGATAAAGGACCCTGGAACAACCCTGAAATCCAAGACTTGCTTCAGACACTATATGTGGCAGAACAAGCAGAGATTGATGCAGAAAA TGCCAGTTTGGCTTCAGAAGAGGCCTTAGCAACACCTGGAAGTAGGCAGATAGACAGAAGAAGGCAAGAAGAAATCAGAGAGAAGGTTGAAAAGATCCAG ACGTTGGAAGCTGCACTCAAGGAAGCCAACACCAAATTTGAAGCATTGGAAAGAGCTATGGAGGATGCCAAGAAGGTAATGAAGGGTCTATCACAACATA TACAAGCTATCAGCCTCTAA
AA sequence Show only first row Show all	>Lus10028938 pacid=23177183 polypeptide=Lus10028938 locus=Lus10028938.g ID=Lus10028938.BGIv1.0 annot-version=v1.0 MFRQNQQPRDIIISRGGSGIVSKGGKANKTKKIIHPPIESYWLLRPMKAEKHSSSAPAATVSSMVSLIKRIGRSRSLNMALEGAHDPKDEDVVNSFREVL FLDGHFLGKRNDYHTLLRFLRMRDFDIPKAKDMFVNYLKWREDYRVDAIAKEFKLEEIGEVKKCYPNGYHGVDRVGRPVYIERLGMVDTNGLLEVTTLDR LVKHHISEQEKTMNLRYPACSIVAKTHIASTTSILDVKGVGISSFSKPARYLFMEIQKIDSNYYPETLHRLYIVNAGSGFRMLWKVLKPFLDVRTLKKIH VLGESYRSELLEAVDPSNLPSFLGGSCSCSSYGGCLFSDKGPWNNPEIQDLLQTLYVAEQAEIDAENASLASEEALATPGSRQIDRRRQEEIREKVEKIQ TLEAALKEANTKFEALERAMEDAKKVMKGLSQHIQAISL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47510			Sec14p-like phosphatidylinosit...		Lus10028938 [exp]	0	1
AT5G36930			Disease resistance protein (TI...		Lus10008526 [exp]	1.0	0.9642
AT5G47510			Sec14p-like phosphatidylinosit...		Lus10007464 [exp]	1.7	0.9564
AT1G55020		ATLOX1, LOX1	ARABIDOPSIS LIPOXYGENASE 1, li...		Lus10038242 [exp]	2.4	0.9421
					Lus10033952 [exp]	2.6	0.9401
AT5G20870			O-Glycosyl hydrolases family 1...		Lus10043075 [exp]	3.2	0.9627
AT2G14620		XTH10, XTR14	xyloglucan endotransglucosylas...		Lus10035654 [exp]	6.9	0.9478
AT2G15310		ATARFB1A	ADP-ribosylation factor B1A (....		Lus10002817 [exp]	7.7	0.9131
AT5G36930			Disease resistance protein (TI...		Lus10000331 [exp]	8.5	0.9401
AT5G46530			AWPM-19-like family protein (....		Lus10011973 [exp]	8.5	0.9259
AT1G52570		PLDALPHA2	phospholipase D alpha 2 (.1)		Lus10041787 [exp]	8.7	0.9422

Compare expression of checked genes

Lus10028938 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.