Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G29170 84 / 1e-19 Eukaryotic protein of unknown function (DUF872) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007465 [exp] 157 / 3e-47 AT3G29170 125 / 2e-38 Eukaryotic protein of unknown function (DUF872) (.1) Lus10034290 [exp] 121 / 1e-30 AT5G02910 53 / 2e-07 F-box/RNI-like superfamily protein (.1.2) Lus10029003 [exp] 122 / 4e-30 AT3G49030 57 / 3e-08 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2) Lus10029083 [exp] 96 / 2e-21 AT1G67390 54 / 6e-08 F-box family protein (.1) Lus10037261 [exp] 89 / 3e-20 AT5G02920 65 / 1e-12 F-box/RNI-like superfamily protein (.1) Lus10037078 [exp] 91 / 8e-20 AT1G10380 170 / 6e-50 Putative membrane lipoprotein (.1) Lus10036905 [exp] 82 / 3e-18 AT5G22660 54 / 1e-08 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2) Lus10003696 [exp] 67 / 2e-12 AT3G51530 52 / 1e-07 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10006219 [exp] 66 / 9e-12 AT1G24430 152 / 3e-43 HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G053300 [exp] 110 / 2e-29 AT3G29170 132 / 3e-41 Eukaryotic protein of unknown function (DUF872) (.1) Potri.016G054301 [exp] 64 / 8e-13 AT3G29170 47 / 4e-08 Eukaryotic protein of unknown function (DUF872) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05915 [flax] [poplar] DUF872 Eukaryotic protein of unknown function (DUF872)
Representative CDS sequence Show only first row Show all	>Lus10028939 pacid=23177327 polypeptide=Lus10028939 locus=Lus10028939.g ID=Lus10028939.BGIv1.0 annot-version=v1.0 ATGGCGACTAGGCGTCATGTTAATTACAGCCCAATTGCCACTGATGATGATGATGGTTACAATGGTACGAGAAATGACCGTCGCTTCGAGTACACTCCTG GGGCATTCGATAGAATTCCGTGGAAATCTGTCATACTTGCAATCTTCTTACTCTTCCTTGGATCGGTTCTTCTTTTCCTGTCTTTCTTCGTTTTCACGGG CCACATGGGTGGAGAGAAGTCACAAGCTTATGGTCTCTTAGCCTTGGGATTCCTTACCTTCTTACCAGTGTTTCGTTATTTACGGTGGGAGGGAGAAAAA AAACCCGAGAAAAATTACAGAAGCAAGAAAAAACCTAAGGAGTTGGAAGAAGATGACCACCAAGGAGCCAATATCACCGGCCGCCGTGGACCTAATCACA TAACTACCGGACGAAATTATCCACATCATCCTTCGAAGCTTAAAATCCCGCAAGTCAGCGGCGAGAACCAGTATCTTGTCCAGAAGATGGCTCAAGCTCT GGAGCACTTACCCTACGCCTATCGTCGAGTTTGTAGATACCGGCAAGAACGGAAAAAACTTCCAGAGCTTTGCCGCTGCCACTTCCGAGAGGCTGCTCGA AGGACCGTCATTACTTTTGGACACCTTTACTGTCATACTGGGGCTCCCGCTAGAGACGCGGAGAGTTGTATGGGGAAAACCCCAGCCGCGATCTCGACAG GTTGCTGTCATCCGGCAGCAGCAAATCCCCGCTTAAGGTTGTGCTGCCACACTGAATCTCTCGACCTAAGAGGCTGCGACATCAGCGGATTGGAATTTAA TTCAGAGACTACTCGTCCGGACAATCTCCAGGAACTCAGTCTGGACCAATCCCGGGTCAGCGAAGAGAGTTTTTCTAGCTTTCTGGCTAATAGTCCTCGT CTCGAGAAACTGAAGTTGCGATGGATTTACGGGATTCGCAGCCTGGATATCTCTGCTTCTAATTTTCCCTCCTTTAAGTCACTCTCCTTTGATCAAGCCA GGTTTGGACTGCCAAAACTCCGTCTCAGTTCAGCTCCTCTCCTGCAGACATTCAGCTTCAAAGGCAGATGTAACCTCCTGAATGTAGTTTCAGCTCCGAA TGTGAAATCGGCAAAGCTTGAGCCGTATTATCCCATCATGGCGGAGAAATTGAGGAATTGA
AA sequence Show only first row Show all	>Lus10028939 pacid=23177327 polypeptide=Lus10028939 locus=Lus10028939.g ID=Lus10028939.BGIv1.0 annot-version=v1.0 MATRRHVNYSPIATDDDDGYNGTRNDRRFEYTPGAFDRIPWKSVILAIFLLFLGSVLLFLSFFVFTGHMGGEKSQAYGLLALGFLTFLPVFRYLRWEGEK KPEKNYRSKKKPKELEEDDHQGANITGRRGPNHITTGRNYPHHPSKLKIPQVSGENQYLVQKMAQALEHLPYAYRRVCRYRQERKKLPELCRCHFREAAR RTVITFGHLYCHTGAPARDAESCMGKTPAAISTGCCHPAAANPRLRLCCHTESLDLRGCDISGLEFNSETTRPDNLQELSLDQSRVSEESFSSFLANSPR LEKLKLRWIYGIRSLDISASNFPSFKSLSFDQARFGLPKLRLSSAPLLQTFSFKGRCNLLNVVSAPNVKSAKLEPYYPIMAEKLRN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G29170			Eukaryotic protein of unknown ...		Lus10028939 [exp]	0	1
AT1G11300			protein serine/threonine kinas...		Lus10018516 [exp]	7.2	0.8897
AT4G12790			P-loop containing nucleoside t...		Lus10041086 [exp]	8.5	0.8915
AT3G18570			Oleosin family protein (.1)		Lus10041987 [exp]	9.5	0.8786
AT5G04260		WCRKC2	WCRKC thioredoxin 2 (.1)		Lus10037975 [exp]	14.1	0.8694
AT4G16100			Protein of unknown function (D...		Lus10037717 [exp]	23.2	0.8711
AT4G17070			peptidyl-prolyl cis-trans isom...		Lus10037182 [exp]	24.2	0.8766
AT2G31570		ATGPX2	glutathione peroxidase 2 (.1)		Lus10027021 [exp]	29.0	0.8841
AT3G04040			unknown protein		Lus10002635 [exp]	31.1	0.8580
AT2G04520			Nucleic acid-binding, OB-fold-...		Lus10014627 [exp]	43.1	0.8641
AT4G25600			Oxoglutarate/iron-dependent ox...		Lus10014973 [exp]	43.5	0.8601

Compare expression of checked genes

Lus10028939 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.