Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000650 [exp] 162 / 7e-49 ND / Lus10001581 [exp] 108 / 3e-27 AT4G21120 915 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Lus10029003 [exp] 99 / 5e-24 AT3G49030 57 / 3e-08 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2) Lus10029083 [exp] 98 / 1e-23 AT1G67390 54 / 6e-08 F-box family protein (.1) Lus10034430 [exp] 94 / 2e-23 ND / Lus10037289 [exp] 96 / 6e-23 AT5G02920 61 / 4e-10 F-box/RNI-like superfamily protein (.1) Lus10003695 [exp] 90 / 1e-22 ND / Lus10034290 [exp] 66 / 2e-12 AT5G02910 53 / 2e-07 F-box/RNI-like superfamily protein (.1.2) Lus10035698 [exp] 60 / 4e-11 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028940 pacid=23177314 polypeptide=Lus10028940 locus=Lus10028940.g ID=Lus10028940.BGIv1.0 annot-version=v1.0 ATGTTTCCATCTATCAAGGCTCTCTGCTTCAATGCAGCAGAGCTCTCCTCATCCAAGCCAACAAAGGTGAGGATTTCGGCTCATACGCTCCAGGAATTAA CTGTTGAAGGCCTATCTTCCAAAACGGAGATCGAAATTGATGCTCCTAATCTCAAAACTTTAACCATCGGTACCGGCAAGCTCGAAGTCAAATGCAATGT CGTCAATGTGGCTCCTAGCTGCCGGTTTGTATTGGATTGCTCTTTTTATGCCTACAAGAACAAGATAACAACACGTTGGTTGATTGATCTGAGGAAGTGT CTGGCAGCATTTGCTACTCATTTCCAGCACTTTGTTTTCAAGTTGGACTACTGCTTCAAATCGGTAGAGATACTTAAATTCATCATGTCGGATAATATTG GTCTTCCTGTGGAGAAGTTGGATTGGGCTCTAGTTGGAATAGAATCTTCTTCTCTAATTATCCGGCATTTACTAATGGGGATTGAGTTCGATTTTGACAA GGGTGATATTGAAGCTAGTTTTTTTTATGTTGTTTTGTCGGCATTCCATCCAAAAAAATTGTCCACAGCGCAGTCGCCTTGTAACGAAAGGCTATTCTCG ATAAGTCCATTGCTTCGTCTGTTAATGTGA
AA sequence Show only first row Show all	>Lus10028940 pacid=23177314 polypeptide=Lus10028940 locus=Lus10028940.g ID=Lus10028940.BGIv1.0 annot-version=v1.0 MFPSIKALCFNAAELSSSKPTKVRISAHTLQELTVEGLSSKTEIEIDAPNLKTLTIGTGKLEVKCNVVNVAPSCRFVLDCSFYAYKNKITTRWLIDLRKC LAAFATHFQHFVFKLDYCFKSVEILKFIMSDNIGLPVEKLDWALVGIESSSLIIRHLLMGIEFDFDKGDIEASFFYVVLSAFHPKKLSTAQSPCNERLFS ISPLLRLLM

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10028940 [exp]	0	1
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10018785 [exp]	1.0	0.9678
					Lus10033191 [exp]	1.4	0.9417
AT1G03890			RmlC-like cupins superfamily p...		Lus10033893 [exp]	2.4	0.9151
AT2G40220	AP2_ERF	ATABI4, GIN6, S...	SUCROSE UNCOUPLED 6, SUGAR-INS...		Lus10009834 [exp]	6.0	0.8425
AT5G16990			Zinc-binding dehydrogenase fam...		Lus10007853 [exp]	6.3	0.8340
AT4G15480		UGT84A1	UDP-Glycosyltransferase superf...		Lus10002810 [exp]	6.5	0.8037
AT2G28630		KCS12	3-ketoacyl-CoA synthase 12 (.1...		Lus10021821 [exp]	7.5	0.7714
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10033385 [exp]	7.7	0.8775
AT2G29940		ABCG31, PDR3, A...	ATP-binding cassette G31, plei...		Lus10020550 [exp]	10.2	0.8721
AT2G43820		SGT1, ATSAGT1, ...	UDP-glucose:salicylic acid glu...		Lus10017826 [exp]	10.4	0.8593

Compare expression of checked genes

Lus10028940 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.