Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16563 462 / 1e-158 Eukaryotic aspartyl protease family protein (.1) AT5G45120 214 / 5e-63 Eukaryotic aspartyl protease family protein (.1) AT4G16566 177 / 3e-53 HINT4 histidine triad nucleotide-binding 4 (.1) AT3G52500 160 / 3e-43 Eukaryotic aspartyl protease family protein (.1) AT3G18490 128 / 9e-32 Eukaryotic aspartyl protease family protein (.1) AT2G03200 117 / 3e-28 Eukaryotic aspartyl protease family protein (.1) AT3G25700 117 / 5e-28 Eukaryotic aspartyl protease family protein (.1.2) AT1G01300 110 / 1e-25 Eukaryotic aspartyl protease family protein (.1) AT3G61820 101 / 1e-22 Eukaryotic aspartyl protease family protein (.1) AT1G09750 100 / 2e-22 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007466 [exp] 802 / 0 AT4G16563 523 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10008513 [exp] 569 / 0 AT4G16563 493 / 7e-172 Eukaryotic aspartyl protease family protein (.1) Lus10000725 [exp] 566 / 0 AT4G16563 508 / 2e-177 Eukaryotic aspartyl protease family protein (.1) Lus10004204 [exp] 166 / 3e-45 AT3G52500 457 / 2e-158 Eukaryotic aspartyl protease family protein (.1) Lus10029408 [exp] 161 / 2e-43 AT3G52500 466 / 5e-162 Eukaryotic aspartyl protease family protein (.1) Lus10018286 [exp] 161 / 4e-43 AT5G45120 520 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10003999 [exp] 120 / 4e-29 AT1G01300 636 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10041494 [exp] 115 / 2e-27 AT3G25700 559 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10007467 [exp] 103 / 7e-27 AT4G16566 53 / 4e-10 histidine triad nucleotide-binding 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G158600 [exp] 576 / 0 AT4G16563 494 / 5e-172 Eukaryotic aspartyl protease family protein (.1) Potri.003G076300 [exp] 561 / 0 AT4G16563 484 / 2e-168 Eukaryotic aspartyl protease family protein (.1) Potri.012G118000 [exp] 210 / 1e-61 AT5G45120 575 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.015G113100 [exp] 199 / 2e-57 AT5G45120 588 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.003G076400 [exp] 179 / 7e-54 AT4G16566 210 / 3e-71 histidine triad nucleotide-binding 4 (.1) Potri.009G162400 [exp] 189 / 1e-53 AT3G52500 396 / 1e-134 Eukaryotic aspartyl protease family protein (.1) Potri.006G204700 [exp] 180 / 2e-50 AT3G52500 504 / 5e-177 Eukaryotic aspartyl protease family protein (.1) Potri.016G071900 [exp] 164 / 8e-45 AT3G52500 491 / 8e-172 Eukaryotic aspartyl protease family protein (.1) Potri.001G306200 [exp] 114 / 2e-27 AT2G03200 501 / 1e-176 Eukaryotic aspartyl protease family protein (.1) Potri.019G002100 [exp] 110 / 1e-25 AT2G03200 529 / 0.0 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease CL0265 [flax] [poplar] HIT PF11969 [flax] [poplar] DcpS_C Scavenger mRNA decapping enzyme C-term binding
Representative CDS sequence Show only first row Show all	>Lus10028941 pacid=23177131 polypeptide=Lus10028941 locus=Lus10028941.g ID=Lus10028941.BGIv1.0 annot-version=v1.0 ATGATAGATGGCAGCTTAGTTAAGAGGGAGATGGCCGGAGCTTCGTCGCCGTCGCCTTGCATCTTCTGTCAAATCTCTGGAAAATCCACCTCCACCAATC TTCTGAATACTGACGATAGAGTAGTGGCTTTCCAGGACATCAGGCCTTCTGCTTTCAGGCATTACCTGGTAATTCCTGTGAAGCACATTGCTACTGTCAA TGATCTGAGAAGAAGAGAAGAGGATTATTCTCTAGTAAGTCACATGTTACAGGTCGGTCGAACTCTATTGCAACAGGATGCTCCTGAGTCAAAACACAGG TTTGGCTTTCATCGGCCACCATTTAACAGTGTGAACCATCTACACCTCCATTGTTTTGCATTGCCCTTCACACCCAACGACTACACCCTCTCCATCACCC TCAGCTCCAATCCTCCCCGCCACGTGGCGCTCTTCCTCGACACCGGCAGCGACCTCGTCTGGTTCCCTTGCCACCCATTTGAATGCATCCTCTGCGAAGG CAAGTCCGAAAACCAATCGTTGACCGTCCCCGTAAATCTCACTTCCTCTTCCGCAGCAGCCTTCGTCCCCTGTAAATCGGCGGCTTGCTCTGCCGCCCAT TCCAATCACCCGACCTCCGACCTCTGCGCGATTGCCAAGTGTCCCTTGGACATGATCGAGACTTCCGATTGTCAGTCTTTCTCCTGCCCTCCTTTCTACT ACGCCTACGGCGACGGGAGCCTCGTCGCTCGCCTTTACACCGACGCCGTCAAGTTGCCGTTAGCTATTCCGTCTCTGGAGATTAAGAATTTCACGTTCGG TTGCGCTCATACTGCTTTAGCCGAACCGGTTGGTGTAGCTGGGTTTGGACCGGGGGTTTTGTCTTTGCCTGTACAGCTCGCTGCTGACTCGCCTGGGTTA GGAAATCGGTTCTCTTACTGTTTAGTTTCTCATTCATTCGACTCGGACAAGGTTCGTCGTCCGAGTCCGTTGATTATCGGCCAGTTGGACGAGAATCGGA AACGGGTCGGTACTGATACCGACCCGGTTCCGACCCGGTATATGTACACTTCGTTGATCGACAACCCGAAACATCCGTACTTCTACACGGTTGGGTTGGA AGGAATTTCGGTTGGGAAGAGGAATATTCCTGCGCCGGATTTCTTACAGGTAGTCGACGGCGAAGGAATGGGAGGATTGGTGGTGGATTCAGGGTCAGGT ACGACTTTCACTATGCTGCCCGCAGGTTTGTACAATTCAGTGGTTTCCGAGTTTGAGAAGTGGGTCGGGCGGGTTTATGAGCGGGCTAATCAGATCGAGT CGAACACTGGGCTGAGCCCGTGCTATTATTACAACGACGTCGTAGCGAAGGTGCCGAGGTTGGTGCTGCATTTCTCCGGGAACGGATCAAGTGTGGAGCT GCCTAGGAAGAACTATTTTTACGAGTTTGTGGACGGTGGAGATGGCGGGAGGAGGAAGAGGAAGAGGAAGGTAGGGTGCTTGATGTTGATGAACGGTGGA GATGAGGAGGAGTTGAGCGGTGGGCCAGCGGGTACTTTGGGGAATTACCAGCAGCAAGGGTTTGAGGTGGTTTATGATTTGGAGAAGAAGAGGGTTGGTT TTGGTAGGAGGGAGTGCGCATCTTTGTGGGAAAGCTTGAACCAAGGATAA
AA sequence Show only first row Show all	>Lus10028941 pacid=23177131 polypeptide=Lus10028941 locus=Lus10028941.g ID=Lus10028941.BGIv1.0 annot-version=v1.0 MIDGSLVKREMAGASSPSPCIFCQISGKSTSTNLLNTDDRVVAFQDIRPSAFRHYLVIPVKHIATVNDLRRREEDYSLVSHMLQVGRTLLQQDAPESKHR FGFHRPPFNSVNHLHLHCFALPFTPNDYTLSITLSSNPPRHVALFLDTGSDLVWFPCHPFECILCEGKSENQSLTVPVNLTSSSAAAFVPCKSAACSAAH SNHPTSDLCAIAKCPLDMIETSDCQSFSCPPFYYAYGDGSLVARLYTDAVKLPLAIPSLEIKNFTFGCAHTALAEPVGVAGFGPGVLSLPVQLAADSPGL GNRFSYCLVSHSFDSDKVRRPSPLIIGQLDENRKRVGTDTDPVPTRYMYTSLIDNPKHPYFYTVGLEGISVGKRNIPAPDFLQVVDGEGMGGLVVDSGSG TTFTMLPAGLYNSVVSEFEKWVGRVYERANQIESNTGLSPCYYYNDVVAKVPRLVLHFSGNGSSVELPRKNYFYEFVDGGDGGRRKRKRKVGCLMLMNGG DEEELSGGPAGTLGNYQQQGFEVVYDLEKKRVGFGRRECASLWESLNQG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16563			Eukaryotic aspartyl protease f...		Lus10028941 [exp]	0	1
AT3G06880			Transducin/WD40 repeat-like su...		Lus10023666 [exp]	2.8	0.8257
AT4G16563			Eukaryotic aspartyl protease f...		Lus10007466 [exp]	8.2	0.8335
AT1G61110	NAC	ANAC025	NAC domain containing protein ...		Lus10015076 [exp]	8.5	0.7602
AT5G47070			Protein kinase superfamily pro...		Lus10040135 [exp]	8.8	0.7628
AT1G28220		ATPUP3	purine permease 3 (.1)		Lus10008212 [exp]	15.0	0.8123
AT1G71140			MATE efflux family protein (.1...		Lus10008911 [exp]	15.2	0.7667
					Lus10036026 [exp]	15.4	0.7279
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Lus10017677 [exp]	19.6	0.7725
AT1G78390		ATNCED9, NCED9	nine-cis-epoxycarotenoid dioxy...		Lus10042481 [exp]	20.7	0.7823
AT1G78390		ATNCED9, NCED9	nine-cis-epoxycarotenoid dioxy...		Lus10042482 [exp]	21.5	0.7281

Compare expression of checked genes

Lus10028941 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.