Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01110 300 / 2e-97 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G05670 186 / 1e-54 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT1G12700 181 / 9e-53 RPF1 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) AT4G11690 175 / 2e-51 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G09900 174 / 7e-51 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G53700 174 / 3e-50 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12775 172 / 7e-50 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G64100 172 / 1e-49 pentatricopeptide (PPR) repeat-containing protein (.1), pentatricopeptide (PPR) repeat-containing protein (.2) AT5G39710 172 / 2e-49 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62910 170 / 3e-49 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007468 [exp] 487 / 2e-170 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013283 [exp] 189 / 5e-56 AT1G05670 785 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Lus10036506 [exp] 181 / 1e-52 AT2G16880 675 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10041421 [exp] 179 / 3e-51 AT2G16880 668 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039056 [exp] 175 / 3e-50 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10042016 [exp] 172 / 6e-50 AT2G32630 600 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10027916 [exp] 174 / 7e-50 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018019 [exp] 171 / 2e-49 AT2G32630 590 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10027914 [exp] 171 / 7e-49 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G276500 [exp] 368 / 8e-124 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G035700 [exp] 185 / 4e-54 AT1G05670 922 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Potri.013G034300 [exp] 179 / 8e-54 AT1G62930 397 / 4e-133 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G147700 [exp] 182 / 2e-53 AT2G15630 736 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G050400 [exp] 179 / 2e-52 AT1G12700 504 / 3e-171 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G034200 [exp] 178 / 4e-52 AT1G12700 511 / 6e-174 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G014500 [exp] 179 / 6e-52 AT1G09820 696 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.017G131600 [exp] 176 / 1e-51 AT4G11690 632 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.005G038400 [exp] 176 / 3e-51 AT1G12700 478 / 7e-161 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G046000 [exp] 176 / 4e-51 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10028943 pacid=23177160 polypeptide=Lus10028943 locus=Lus10028943.g ID=Lus10028943.BGIv1.0 annot-version=v1.0 ATGCAGAAATCTGGTTTTGTTCCTGATAATGTGATCTACACTATTCTTATAGATGGGCATTGTAGAAATGGCATGATGACTGAGGCAATGAAGATTCGGG ATGTAATGCTTCAGAAGGGTTGTATTTTGGATGTGATAACATACAATACTATATTGAACGGATTATGCAAGGAGAAGATGCTCACAGATGCTGATAATTT GCTGGACGAGATGATGGAGAGAGGTATGTTCCCTGACTTTTACACTTACACCACTCTTATCAATGGACATTGTAAAAATGGAGATTTGAGCAAGGCTCAA AGCTTGTTTGAGACGATGAAGTTGAAACATATAAAAGCAGACATTGTGACATACAATGCATTAATTGATGGATTTTGCAAAATTGGTGAAATGGAGAAAG CGAATCAGCTATGGCATGACATGATTTCTAGAAAGATGCTTCCGAATCACATTTCGTATGGCACTCTGATAAATGGATATTGCAGTTTAGGTAGTGTATC TGAGGCCTTCAGGTTATTGGATGAGATGATTGAAAGGGGTATTAGACCCAGTCTTGTTACATGTAACACTGTTATAAAGGGATATTGCCTGTCCGGCAAT GCTTCAAAAGCAGTTGAGTTCTTGGATAAGATGACTGCAAAAGAAATTTTTCCAGACAATATCACATTCAACACCCTCATTTCTAGTTTTGTGAGAGGAG AAAATATGGACAAAGCATAG
AA sequence Show only first row Show all	>Lus10028943 pacid=23177160 polypeptide=Lus10028943 locus=Lus10028943.g ID=Lus10028943.BGIv1.0 annot-version=v1.0 MQKSGFVPDNVIYTILIDGHCRNGMMTEAMKIRDVMLQKGCILDVITYNTILNGLCKEKMLTDADNLLDEMMERGMFPDFYTYTTLINGHCKNGDLSKAQ SLFETMKLKHIKADIVTYNALIDGFCKIGEMEKANQLWHDMISRKMLPNHISYGTLINGYCSLGSVSEAFRLLDEMIERGIRPSLVTCNTVIKGYCLSGN ASKAVEFLDKMTAKEIFPDNITFNTLISSFVRGENMDKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01110			Tetratricopeptide repeat (TPR)...		Lus10028943 [exp]	0	1
AT1G49480	B3	REM19, RTV1	related to vernalization1 1 (....		Lus10009214 [exp]	6.2	0.7260
AT5G23200			unknown protein		Lus10017393 [exp]	9.6	0.7043
AT2G25660		EMB2410	embryo defective 2410 (.1)		Lus10022111 [exp]	17.7	0.7082
AT5G01910			unknown protein		Lus10035364 [exp]	23.5	0.6645
AT4G37460		SRFR1	SUPPRESSOR OF RPS4-RLD 1, Tetr...		Lus10014863 [exp]	27.2	0.6891
AT3G52750		FTSZ2-2	Tubulin/FtsZ family protein (....		Lus10022718 [exp]	28.7	0.6195
AT3G25970			Pentatricopeptide repeat (PPR)...		Lus10030249 [exp]	33.4	0.6657
AT3G01460		MBD9, ATMBD9	methyl-CPG-binding domain 9 (....		Lus10030624 [exp]	40.8	0.6501
AT5G32440			Ubiquitin system component Cue...		Lus10027699 [exp]	43.5	0.6160
AT5G02440			unknown protein		Lus10000246 [exp]	57.1	0.6203

Compare expression of checked genes

Lus10028943 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.