Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17300 711 / 0 ATNS1, NS1, OVA8 ovule abortion 8, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) AT1G70980 414 / 5e-140 SYNC3, SYNC1 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) AT5G56680 398 / 1e-133 SYNC1ARATH, SYNC1, EMB2755 EMBRYO DEFECTIVE 2755, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) AT3G07420 293 / 5e-92 ATNS2, SYNC2_ARATH, NS2 SYNTHETASE C2, asparaginyl-tRNA synthetase 2 (.1) AT1G68420 90 / 9e-22 Class II aaRS and biotin synthetases superfamily protein (.1) AT4G26870 92 / 2e-19 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) AT4G31180 77 / 8e-15 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007470 [exp] 801 / 0 AT4G17300 873 / 0.0 ovule abortion 8, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Lus10032704 [exp] 396 / 6e-133 AT5G56680 907 / 0.0 EMBRYO DEFECTIVE 2755, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Lus10012920 [exp] 331 / 5e-108 AT5G56680 799 / 0.0 EMBRYO DEFECTIVE 2755, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Lus10038228 [exp] 236 / 1e-73 AT3G07420 353 / 7e-118 SYNTHETASE C2, asparaginyl-tRNA synthetase 2 (.1) Lus10025874 [exp] 239 / 2e-71 AT3G07420 604 / 0.0 SYNTHETASE C2, asparaginyl-tRNA synthetase 2 (.1) Lus10008180 [exp] 157 / 4e-45 AT5G56680 268 / 2e-87 EMBRYO DEFECTIVE 2755, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Lus10018862 [exp] 93 / 8e-20 AT4G31180 667 / 0.0 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2) Lus10028555 [exp] 89 / 4e-19 AT4G31180 606 / 0.0 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2) Lus10028557 [exp] 48 / 2e-06 AT4G31180 235 / 8e-76 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G129800 [exp] 756 / 0 AT4G17300 872 / 0.0 ovule abortion 8, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Potri.017G028800 [exp] 749 / 0 AT4G17300 888 / 0.0 ovule abortion 8, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Potri.006G153900 [exp] 415 / 4e-140 AT5G56680 929 / 0.0 EMBRYO DEFECTIVE 2755, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Potri.018G070000 [exp] 400 / 2e-134 AT5G56680 931 / 0.0 EMBRYO DEFECTIVE 2755, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Potri.002G249700 [exp] 281 / 4e-87 AT3G07420 654 / 0.0 SYNTHETASE C2, asparaginyl-tRNA synthetase 2 (.1) Potri.006G085400 [exp] 76 / 1e-14 AT4G31180 709 / 0.0 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0040 [flax] [poplar] tRNA_synt_II PF00152 [flax] [poplar] tRNA-synt_2 tRNA synthetases class II (D, K and N)
Representative CDS sequence Show only first row Show all	>Lus10028945 pacid=23177168 polypeptide=Lus10028945 locus=Lus10028945.g ID=Lus10028945.BGIv1.0 annot-version=v1.0 ATGCAATGTGTATTGGACCCACAAGTTGAAGGCTACGATCAGGTAGAATCTGGTGCTATAGTTACTGGTGTGTCCGTAAGTGTACAAGGAACTATAGTGG AGAGCCAAGGGTCAAAGCAAAAGGTTGAATTGAAGGTCAACAAACTTGTACTGGTTGGTAAGAGTGATCCATCATATCCAATGCAAAAGAAAAGAGCCAC CAGAGAGTTTTTGAGAACTAAAGCTCATCTTCGTCCCCGAACGAATACATTCAGTGCGGTCGCCAGAGTGAGGAATGCTTTAGCATATGCTACCCACAAG TTCTTTCAAGAAAATGGGTTTGTTTGGGTCTCAAGTCCTATTATCACTGCCTCAGATTGTGAAGGAGCAGGCGAACAGTTCTGTGTTACTACATTGATTC CAGGCTCTCAAGAAGTGAGTAAATCACATGTAGATGGCATTCCTAAAACCAAGGATGGATTGATCGACTGGTCGCAAGACTTTTTCGGGAAACCGGCCTT CTTGACTGTCTCTGGCCAGCTCAATGCTGAAACATACGCTACTGCTCTTTCAGATGTATATACATTTGGCCCAACATTTCGTGCAGAAAACTCCAACACT TCTAGACACCTGGCGGAATTCTGGATGATTGAACCAGAACTAGCATTTGCGGATTTGAATGATGATATGGCCTGTGCTACTGCCTATCTCCAGTATGTAG TGAGGCACATCCTTGAAAATTGTAAGGAAGACATGGAATTTTTCAATACTTGGATCGAGAAGGGGATCATTGATCGCTTAATTAACGTGGCTGAGAAGGA ATTCGTGCAGTTGACGTACACTGATGCAGTTGAACTACTTCTCAAAACAAATAAGAAGTTCGAATTCCCGGTGGCATGGGGATGTGATTTGCAGAGTGAG CATGAGCGGTACATAACCGAAGAAGCATTTGGTGGATGCCCTGTCATAATCAGAGATTATCCCAAGGCACTTCCTCTGCTTCTTTTCTTTCCCAACGCAT TATGTGGACAGTATATGATGCCAGGATGTAGTCCTGAAACCTTTTGTTTGTTTATTCCTCTGCAGGAAATCAAAGCATTTTATATGCGCCAGAATGATGA TGGCAAGACGGTTGCTGCCATGGATCTGTTGGTCCCTCGGGTTGGGGAGCTGATGGGGGGAAGTCAAAGAGAAGAACGGCTTGATTATCTGGAAGCTCGT TTGGATGAGTTGAATCTTAACAAGGAGAGCTACTGGTGGTACCTTGATTTGCGACGTTACGGTTCAGGTTGGTTGGTCACTTGCAGTGAAGCCGACAAGG GTGTTGTCACCAATATTTGGTGGTTAATGGATGTTGTTGCAGTTCCTCACGCTGGTTTCGGAGCTGGATTCGAAAGGCTGGTGCAGTTTGCAACTGGTTT AGAGAATATTAAAGATACAATACCGTTTCCTCGCACCCCTGGCTCTGCTGAGTTCTGA
AA sequence Show only first row Show all	>Lus10028945 pacid=23177168 polypeptide=Lus10028945 locus=Lus10028945.g ID=Lus10028945.BGIv1.0 annot-version=v1.0 MQCVLDPQVEGYDQVESGAIVTGVSVSVQGTIVESQGSKQKVELKVNKLVLVGKSDPSYPMQKKRATREFLRTKAHLRPRTNTFSAVARVRNALAYATHK FFQENGFVWVSSPIITASDCEGAGEQFCVTTLIPGSQEVSKSHVDGIPKTKDGLIDWSQDFFGKPAFLTVSGQLNAETYATALSDVYTFGPTFRAENSNT SRHLAEFWMIEPELAFADLNDDMACATAYLQYVVRHILENCKEDMEFFNTWIEKGIIDRLINVAEKEFVQLTYTDAVELLLKTNKKFEFPVAWGCDLQSE HERYITEEAFGGCPVIIRDYPKALPLLLFFPNALCGQYMMPGCSPETFCLFIPLQEIKAFYMRQNDDGKTVAAMDLLVPRVGELMGGSQREERLDYLEAR LDELNLNKESYWWYLDLRRYGSGWLVTCSEADKGVVTNIWWLMDVVAVPHAGFGAGFERLVQFATGLENIKDTIPFPRTPGSAEF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17300		ATNS1, NS1, OVA...	ovule abortion 8, Class II ami...		Lus10028945 [exp]	0	1
AT5G38360			alpha/beta-Hydrolases superfam...		Lus10028478 [exp]	3.7	0.8110
AT4G17300		ATNS1, NS1, OVA...	ovule abortion 8, Class II ami...		Lus10007470 [exp]	6.0	0.7594
AT5G52520		PRORS1, OVA6	PROLYL-TRNA SYNTHETASE 1, OVUL...		Lus10027506 [exp]	7.1	0.7869
AT5G51820		STF1, PGM1, ATP...	STARCH-FREE 1, ARABIDOPSIS THA...		Lus10031669 [exp]	12.0	0.7761
AT1G08640		CJD1	Chloroplast J-like domain 1 (....		Lus10042564 [exp]	12.2	0.7606
AT2G40540		ATKUP2, ATKT2, ...	potassium transporter 2 (.1.2)		Lus10030539 [exp]	13.3	0.7358
AT5G06340		ATNUDX27	nudix hydrolase homolog 27 (.1...		Lus10029398 [exp]	15.9	0.7422
AT4G25050		ACP4	acyl carrier protein 4 (.1.2)		Lus10037908 [exp]	20.8	0.7412
AT1G10510		EMB2004	embryo defective 2004, RNI-lik...		Lus10030829 [exp]	21.0	0.7527
AT4G36790			Major facilitator superfamily ...		Lus10041712 [exp]	23.5	0.7265

Compare expression of checked genes

Lus10028945 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.