Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47490 1097 / 0 RGPR-related (.1) AT5G47480 1063 / 0 RGPR-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008520 [exp] 1732 / 0 AT5G47490 1143 / 0.0 RGPR-related (.1) Lus10004721 [exp] 1669 / 0 AT5G47490 1141 / 0.0 RGPR-related (.1) Lus10007471 [exp] 1587 / 0 AT5G47490 778 / 0.0 RGPR-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G157800 [exp] 1625 / 0 AT5G47490 1114 / 0.0 RGPR-related (.1) Potri.003G077100 [exp] 1545 / 0 AT5G47490 1033 / 0.0 RGPR-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028946 pacid=23177243 polypeptide=Lus10028946 locus=Lus10028946.g ID=Lus10028946.BGIv1.0 annot-version=v1.0 ATGACTACAAATCCTCCATTCCAAGCGATGGAGGATCAAATCGACGATGATTTCTTTGACAAATTGGTCGATGATGATTTTGGCCCCACCATTTCTGGTA CCGGCCACGACAAATTGACGGATGGGAGTGATTCCGATGAGGCCAAGGCTTTTGCTAACCTGAGCATGGAGGATGTCACCGGTGGCGATGCTGGAGCTGA GGAGGTCAGAGATGACAAGATTTCTTCTATGGGTGATAGTTCAGGGTTTTCTGGGGCTTCCCCAGAAGTGAGTGATGCATTGAACTTGTCTGGATCATCT GGGTCTGCTAATGCAGTGGAATTGAGTAATGATGGATTAAAATCAGAGATCATTACTGAGTCAGCTCCAGTTACTGGCAGCGGATCCACAAAGCTTGGAG CTAAGGTGATGGATTGGGGTTCTCTGTATGCTGATTCTGCTTCGAATGGAAATCATGAGTTTGGTTCATATGATTTTTTCAGCGAGTTGGGAGGTAATTC TGATGGTTCTCCCCAAAAAGTTGACGGAACCGTCAATGTTCTAGATAGTGCAGGTGGGAAATTGGAGAATACGGTTAACTATGAGGCATATCAAGAAGGT ATGCAGAGTCATGGAGGTCATATGCAACAAAATGCAAACGAGCAGGATTCTAGTAGCAGTCAGGACTGGGAAAGTATGTATCCTGGATGGAAATATGATA TGAACACTGGGCAATGGTATCAAGTAGACAGTTATGGTGCTACAGCCGATCCCCAAGAGAGTTATGATTCCAATATAGGGAGTGAATGGGCTGCTGCATC TGATAGGAAGGGAGAGGTTAATTTCTTCAAGCAGGGGTCTCAGTCTGTGGCTGGAACCATTGCCGAGACCAGTGCAACTGAGAGTGTGTCTGCCTGGAAT CGGGTATCGCAGGAAAGTAACAATGGTTACCCGGAACATATGATTTTTGATCCTCAGTATCCAGGTTGGTATTATGACACAATCGCACAAGAATGGCGTT CATTGGAGAGCTATGCTTCATCAGTACAGCAGGTGATTCCCCAAACTCTTGAGCAACACAATCAAAATGGATATGGTTCACACAATACGTATTCGCAGAA TGGCAGTGATGTATATGGGGAATTTGCGCAAGCTGAGAAGCATGGCTCACATGGTTACACTAGCCAAGAACAAGAAATTAGGGGACAAGAAATTAGCAGG GGTGAGTCACATGGAAGTTACAACCAGAGTGATCTGTCTATGTGGCAAGCAGAAAGTGCTCCCAAGAATGATTTTAGTCCAGATTATGGTCAAAATCAGC AGGTGCAGAACTCCTATGGCTCAAATGCTTTGATGGGCAATCATTTTGATAATAACAAGTCCTTTAATACCATGGGAACTGTTCCCTCATATGACAAATT GAGGCAGGGTCATTCTGAGGGCAATGGGTTTCTGGGCTCACAAGCTTTTGTCCAGGGTGGCAACTTCAATCAACAATTTAATCAGGGAAATGTGAAGACC GAGCCGATGTATTTTTCGAATGATTTATATAGCAGTACAAAACCAATGAATTTTACAGATCAATCATATCAGAATAGTCAGCAGTATTCTTATGCTCCAA CTACTGGAAGATCTTCTGCTGGCCGTCCTCCACATGCACTGGTCTCTTTTGGGTTTGGTGGAAAGCTTTTAATAATGAAAGATGATAGCCTTGCAAACTC TTCATTTGGCACCCAGGCTGCTGTCGGAGGCTCAGTTTCTCTCATGAATTTAATGGAGGTTGTTTCTGGAAGTAGTATAGACAGTGTTTCCACTGCTAGA GGCGCATCCTGCAATTATTTCCATCCTCTCTGCCAACAGTCGTTTCCTGGTCCACTGGTGGGGGGGAATGCTGGGAGTAAAGATTTGAATAAGTGGATTG ATGAGAGGATTGCTTACTGTGAGTCACCCGATATGGATTATAGAAAAGGCGAAGTATTGAAACTTCTCCTTTCCTTGCTGAAAATAGCATGTAAACATTA TGGAAAACTTCGGTCTCCTTTTGGGTCGGACACATCTTTGAAGGAAAGTGATACACCAGAATCAGCAGTTGCAAAACTGTTTTCATCTGCCAAGAGAAAT TTCAGCGAGTATGGTGGTCTTAGCCACTGTTTGCAGACTTTGCCATCTGAAACACAACTTCAGGCAACTGCTTCTGAGGTACAAAATCTTCTGGTTTCTG GTAGAAAACAAGAAGCTTTACAATTTGCACAGGAAGGCCAATTGTGGGGACCTGCACTTGTGCTTGCATCACAACTTGGACAGCAGTTCTATATTGATAC CGTGAAGCAAATGGCACTACGCCAATTGTTGCCTGGATCACCTTTACGGACGTTGTGCCCTCTCATTGCCGGGGAGCCAGCAGAAGTTTTTTCTTCAGAC ACCAAATCTGATGGCACTCCACAGCCTTTGCAACCTGGACCAAATAGCATGCTCGATGACTGGGAACAGAATTTGGCTTTGATAACTGCAAATAGAACAA AAGATGATGAGCTTGTGATCATACATCTTGGGGACTGTCTGTGGAAAGATCGTAGTGAGATTACAGCGGCTCATATATGCTATCTAGTTGCAGAAGCTAA CTTCGAGACATATTCAGACAGTGCAAGGCTCTGTCTTATTGGCGCCGACCACTGGAAGCATCCTCGTACTTTTGCTAGTCCAGAAGCTATTCAGAGAAAT GAACTTTACGAGTACTCGAAGGTGCTAGGTAACTCCCAGTTCATATTGCTGCCATTTCAGCCGTATAAGATTGTTTATGCATACATGCTGGCTGAAGTAG GCAGAGTCTCCGACTCTTTGAAGTACTGTCAAGCAGTATTAAAATCTTTGAAAACGGGCCGAGCTCCTGAAGTAGAAACTTGGAAACAATTAGTATCATC CCTTGAGGAAAGGATTCGGATACACCAACAGGGTGGATATGCTGCAAATTTGGCACCGGCAAAGTTGGTGGGTAAATTGCTCAATTTCTTCGACAGTACT GCACATCGTGTTGTTGGGGGTCTACCGCCACCAGCGCCATCAACATCACAAGATCAGCAATCGATGGCACCTAGAGTGGCTGCTAGTCAGTCAACAATGG CAATGTCAACATTGGTACCATCTGCTTCCATGGAACCCGTAAGTGAATGGGCTGCCGACGGCAATAGAATGGGAAGACATTCTAGAAGTGTCTCGGAGCC TGACTTCAATCGAACTCCAAGACAGGGTCAGGCTGATCCCTCGACAGGCGCATCCACCTCCAGTTCCCAAGAGAAGACATCAAGTTCACCAGGGGTATCT CGCTTGGGTCGTTTTGCTTTTGGATCCCAGCTACTTCAGAAGACAGTGGGCCTAGTGTTACGACCCCGTTCAGATAAGCAGGCAAAGCTAGGTGAGAAGA ACAAATTTTACTATGATGAAAAGCTTAAAAGATGGGTAGAAGAAGGTGTAGATCCCCCAGCTGAGGAAGCTGCCCCGCCACCTCCACCAACTACTGCCTT CTTTCAGAATGGAGCATCTGACTACAACTTAAATTCCGCTCTGAAAAATGAGGGTTCCCCTCCCAGTGGGAGCCCCAAATTCCGGAGTCCAGCTACACAA GAACATAGTTCTGGAATTCCACAGATGCCTACCGGCGGAAATCAATTTGCAGCCCGTGGACGGATGGGTGTTCGAGCAAGATATGTAGACACTTTCAACC AAGGCGGTGGAAAGGCAGCAAATTTATTCCATTCACCGCCTTTGCCGTCTGCTAAACCGGTTGCTCCTATGAACCCCAAGTTTTTTGTCCCTGCACCTGC GCCTTCCGCCGATTATCTTACCGGAACTGCGGTAGAGAATGTTGAAGACAACTTTGCAGCTAGTGAAATTCCTCCGGCAACTTTCATGGACCATAATTCT TTCCAGCCAACGATAACCTCCATGAACAACTCATTCCAGCCTCCGGCATCTTCGTCGCCAATGGTAATGCAAAGGGTCCCCAGTCTGGATAACATTCAGA GAGGTAGAGTCGGCCTGAATAACAATGGCGGTGCAAACTCTCAATCTCGACGAACAGCCTCGTGGAGTGGCAGTACCAATTCCTCATTCAGCCCACCGAG GCCAGCAGAGACCCCCAAATCCTCACTTGGCATGCCGGCTGCATCTTTTATGCCTGTCGAGCCGCCTGCCATGACTCGTGTGCCTACAAATGGCAGTAGC TTTGGCGACCTTCAGGAAGTGGAACTTTGA
AA sequence Show only first row Show all	>Lus10028946 pacid=23177243 polypeptide=Lus10028946 locus=Lus10028946.g ID=Lus10028946.BGIv1.0 annot-version=v1.0 MTTNPPFQAMEDQIDDDFFDKLVDDDFGPTISGTGHDKLTDGSDSDEAKAFANLSMEDVTGGDAGAEEVRDDKISSMGDSSGFSGASPEVSDALNLSGSS GSANAVELSNDGLKSEIITESAPVTGSGSTKLGAKVMDWGSLYADSASNGNHEFGSYDFFSELGGNSDGSPQKVDGTVNVLDSAGGKLENTVNYEAYQEG MQSHGGHMQQNANEQDSSSSQDWESMYPGWKYDMNTGQWYQVDSYGATADPQESYDSNIGSEWAAASDRKGEVNFFKQGSQSVAGTIAETSATESVSAWN RVSQESNNGYPEHMIFDPQYPGWYYDTIAQEWRSLESYASSVQQVIPQTLEQHNQNGYGSHNTYSQNGSDVYGEFAQAEKHGSHGYTSQEQEIRGQEISR GESHGSYNQSDLSMWQAESAPKNDFSPDYGQNQQVQNSYGSNALMGNHFDNNKSFNTMGTVPSYDKLRQGHSEGNGFLGSQAFVQGGNFNQQFNQGNVKT EPMYFSNDLYSSTKPMNFTDQSYQNSQQYSYAPTTGRSSAGRPPHALVSFGFGGKLLIMKDDSLANSSFGTQAAVGGSVSLMNLMEVVSGSSIDSVSTAR GASCNYFHPLCQQSFPGPLVGGNAGSKDLNKWIDERIAYCESPDMDYRKGEVLKLLLSLLKIACKHYGKLRSPFGSDTSLKESDTPESAVAKLFSSAKRN FSEYGGLSHCLQTLPSETQLQATASEVQNLLVSGRKQEALQFAQEGQLWGPALVLASQLGQQFYIDTVKQMALRQLLPGSPLRTLCPLIAGEPAEVFSSD TKSDGTPQPLQPGPNSMLDDWEQNLALITANRTKDDELVIIHLGDCLWKDRSEITAAHICYLVAEANFETYSDSARLCLIGADHWKHPRTFASPEAIQRN ELYEYSKVLGNSQFILLPFQPYKIVYAYMLAEVGRVSDSLKYCQAVLKSLKTGRAPEVETWKQLVSSLEERIRIHQQGGYAANLAPAKLVGKLLNFFDST AHRVVGGLPPPAPSTSQDQQSMAPRVAASQSTMAMSTLVPSASMEPVSEWAADGNRMGRHSRSVSEPDFNRTPRQGQADPSTGASTSSSQEKTSSSPGVS RLGRFAFGSQLLQKTVGLVLRPRSDKQAKLGEKNKFYYDEKLKRWVEEGVDPPAEEAAPPPPPTTAFFQNGASDYNLNSALKNEGSPPSGSPKFRSPATQ EHSSGIPQMPTGGNQFAARGRMGVRARYVDTFNQGGGKAANLFHSPPLPSAKPVAPMNPKFFVPAPAPSADYLTGTAVENVEDNFAASEIPPATFMDHNS FQPTITSMNNSFQPPASSSPMVMQRVPSLDNIQRGRVGLNNNGGANSQSRRTASWSGSTNSSFSPPRPAETPKSSLGMPAASFMPVEPPAMTRVPTNGSS FGDLQEVEL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47490			RGPR-related (.1)		Lus10028946 [exp]	0	1
AT5G47490			RGPR-related (.1)		Lus10007471 [exp]	1.0	0.9901
AT2G28520		VHA-A1	vacuolar proton ATPase A1 (.1)		Lus10036133 [exp]	3.5	0.9487
AT1G65580		FRA3	FRAGILE FIBER3, Endonuclease/e...		Lus10024113 [exp]	4.0	0.9330
AT1G55860		UPL1	ubiquitin-protein ligase 1 (.1...		Lus10032589 [exp]	4.7	0.9648
AT1G31780			unknown protein		Lus10037281 [exp]	4.9	0.9394
AT5G54200			Transducin/WD40 repeat-like su...		Lus10039934 [exp]	5.2	0.9381
AT4G38200			SEC7-like guanine nucleotide e...		Lus10022983 [exp]	5.2	0.9491
AT3G19960		ATM1, ATATM	myosin 1 (.1.2)		Lus10010173 [exp]	5.7	0.9172
AT5G28350			Quinoprotein amine dehydrogena...		Lus10018824 [exp]	6.0	0.9409
AT1G79570			Protein kinase superfamily pro...		Lus10031750 [exp]	8.1	0.9370

Compare expression of checked genes

Lus10028946 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.