Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14130 432 / 3e-154 XTR7, XTH15 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) AT3G23730 425 / 1e-151 XTH16 xyloglucan endotransglucosylase/hydrolase 16 (.1) AT5G57550 375 / 3e-132 XTR3, XTH25, EXGT-A5 xyloglucan endotransglycosylase 3, xyloglucan endotransglucosylase/hydrolase 25 (.1) AT4G25810 363 / 4e-127 XTH23, XTR6 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) AT4G30270 357 / 3e-125 XTH24, SEN4, BRU1, MERI-5, MERI5B SENESCENCE 4, meristem-5, MERISTEM 5, xyloglucan endotransglucosylase/hydrolase 24 (.1) AT5G57560 357 / 5e-125 XTH22, TCH4 xyloglucan endotransglucosylase/hydrolase 22, Touch 4, Xyloglucan endotransglucosylase/hydrolase family protein (.1) AT5G57530 352 / 1e-122 AtXTH12, XTH12 xyloglucan endotransglucosylase/hydrolase 12 (.1) AT5G57540 347 / 4e-121 AtXTH13, XTH13 xyloglucan endotransglucosylase/hydrolase 13 (.1) AT4G25820 343 / 2e-119 ATXTH14, XTR9, XTH14 xyloglucan endotransglycosylase 9, xyloglucan endotransglucosylase/hydrolase 14 (.1) AT5G48070 333 / 3e-115 XTH20, ATXTH20 xyloglucan endotransglucosylase/hydrolase 20 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008522 [exp] 420 / 2e-149 AT3G23730 430 / 2e-153 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10000678 [exp] 416 / 4e-148 AT3G23730 410 / 6e-146 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10004723 [exp] 415 / 1e-147 AT3G23730 431 / 1e-153 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10021638 [exp] 413 / 9e-147 AT3G23730 413 / 7e-147 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10031393 [exp] 380 / 1e-133 AT3G23730 388 / 8e-137 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10010939 [exp] 379 / 2e-133 AT3G23730 384 / 2e-135 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10010938 [exp] 377 / 1e-132 AT4G14130 386 / 3e-136 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Lus10031392 [exp] 377 / 2e-132 AT3G23730 384 / 3e-135 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10023221 [exp] 373 / 1e-130 AT3G23730 376 / 4e-132 xyloglucan endotransglucosylase/hydrolase 16 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G146100 [exp] 434 / 2e-155 AT3G23730 451 / 1e-161 xyloglucan endotransglucosylase/hydrolase 16 (.1) Potri.002G236200 [exp] 424 / 4e-151 AT3G23730 436 / 1e-155 xyloglucan endotransglucosylase/hydrolase 16 (.1) Potri.005G201200 [exp] 415 / 2e-147 AT4G14130 405 / 2e-143 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.005G201250 [exp] 414 / 4e-147 AT4G14130 395 / 2e-139 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.002G060500 [exp] 404 / 4e-143 AT4G14130 424 / 3e-151 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.002G060400 [exp] 390 / 9e-138 AT4G14130 402 / 2e-142 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.011G077320 [exp] 389 / 4e-137 AT3G23730 386 / 7e-136 xyloglucan endotransglucosylase/hydrolase 16 (.1) Potri.013G005700 [exp] 381 / 2e-133 AT4G25810 431 / 5e-153 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.018G095100 [exp] 374 / 1e-131 AT4G25810 420 / 1e-149 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.018G095200 [exp] 371 / 2e-130 AT4G25810 414 / 3e-147 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF00722 [flax] [poplar] Glyco_hydro_16 Glycosyl hydrolases family 16 CL0004 [flax] [poplar] Concanavalin PF06955 [flax] [poplar] XET_C Xyloglucan endo-transglycosylase (XET) C-terminus
Representative CDS sequence Show only first row Show all	>Lus10028947 pacid=23177197 polypeptide=Lus10028947 locus=Lus10028947.g ID=Lus10028947.BGIv1.0 annot-version=v1.0 ATGGCGACAACGGCTGCTGGTTTAGCTTTGTTAGTACTATGCATGACGATGGGCACGGCCTTCGGCGGGAACTTCTACGACGAGTTTGATCTAACTTGGG GTGGGGACAGAGCCAGGATATTCGGCGCCGGGAACGGCCAGATGCTGTCTTTGTCTCTGGATAAGGCGTCCGGGTCAGGGTTCCGGTCGAAGAAGGAGTA CTTGTTCGGGAGGATTGATGTTCAGCTCAAGCTCGTCACCGGTAACTCTGCTGGCACCGTTACGGCTTACTATTTGTCATCACAAGGACCGACTCACGAC GAGATCGATTTCGAGTTCTTAGGGAACCTAAGTGGAGACCCGTACACATTACATACGAACGTGTTCACCCAAGGCAAAGGAAACAGAGAGCAACAATTCC ACCTGTGGTTCGACCCGACCAAGAACTTCCACACTTACTCTATCGTATGGAAGCCTCAACACATCATATTCTTGGTGGACAACATCCCGATCAGGGTATT CAAGAACGTCGAAAAGTTGGGAGTTCCATTCCCAAAGAGCCAACCTATGAGGATTTACTCCAGCCTATGGAACGCCGACGACTGGGCGACGCGTGGTGGT TTGGTGAAGACCGATTGGTCGAAAGCTCCGTTCACTGCCTACTACAGAAACTTCCAGGCTACCCATTTGTCGTCGTCGACCAACTCCGTCCCCAGTGGCG ATTGGGAATCCAACGAACTGAATGCCAATGGCCGAAGGCGGCTGCGATGGGTTCAGAGATATTTCATGGTTTACAATTACTGTGCTGACTCCAAACGCTT CCCTCAAGGCTTTCCTGTTGAGTGTAAAGGCTCAAGATTCTGA
AA sequence Show only first row Show all	>Lus10028947 pacid=23177197 polypeptide=Lus10028947 locus=Lus10028947.g ID=Lus10028947.BGIv1.0 annot-version=v1.0 MATTAAGLALLVLCMTMGTAFGGNFYDEFDLTWGGDRARIFGAGNGQMLSLSLDKASGSGFRSKKEYLFGRIDVQLKLVTGNSAGTVTAYYLSSQGPTHD EIDFEFLGNLSGDPYTLHTNVFTQGKGNREQQFHLWFDPTKNFHTYSIVWKPQHIIFLVDNIPIRVFKNVEKLGVPFPKSQPMRIYSSLWNADDWATRGG LVKTDWSKAPFTAYYRNFQATHLSSSTNSVPSGDWESNELNANGRRRLRWVQRYFMVYNYCADSKRFPQGFPVECKGSRF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14130		XTR7, XTH15	xyloglucan endotransglycosylas...		Lus10028947 [exp]	0	1
AT2G03210		ATFUT2, FUT2	fucosyltransferase 2 (.1)		Lus10008693 [exp]	13.6	0.8542
AT1G72310		ATL3	RING/U-box superfamily protein...		Lus10019686 [exp]	13.9	0.8993
AT1G17860			Kunitz family trypsin and prot...		Lus10011090 [exp]	22.5	0.8918
AT3G26270		CYP71B25	"cytochrome P450, family 71, s...		Lus10019463 [exp]	25.0	0.8866
AT3G48280		CYP71A25	"cytochrome P450, family 71, s...		Lus10043313 [exp]	34.1	0.8887
AT1G10140			Uncharacterised conserved prot...		Lus10007729 [exp]	35.8	0.8777
AT2G38640			Protein of unknown function (D...		Lus10007423 [exp]	38.3	0.8802
AT3G48310		CYP71A22	"cytochrome P450, family 71, s...		Lus10019462 [exp]	39.9	0.8729
AT1G73990		SPPA1, SPPA	signal peptide peptidase (.1)		Lus10013332 [exp]	57.9	0.8768
AT2G41480			Peroxidase superfamily protein...		Lus10020826 [exp]	62.9	0.8619

Compare expression of checked genes

Lus10028947 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.