Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019813 [exp] 309 / 3e-109 ND / Lus10014101 [exp] 306 / 6e-108 ND / Lus10014099 [exp] 304 / 3e-107 ND / Lus10019815 [exp] 300 / 7e-106 ND / Lus10037860 [exp] 223 / 7e-75 ND / Lus10000191 [exp] 204 / 2e-67 ND / Lus10039879 [exp] 203 / 5e-67 ND / Lus10029851 [exp] 201 / 2e-66 ND / Lus10024445 [exp] 196 / 1e-64 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G158600 [exp] 281 / 8e-98 ND / Potri.014G081800 [exp] 278 / 7e-97 ND / Potri.002G158700 [exp] 273 / 1e-94 ND / Potri.014G082700 [exp] 270 / 2e-93 ND / Potri.019G100100 [exp] 260 / 7e-90 ND / Potri.014G081900 [exp] 253 / 1e-86 ND / Potri.014G082000 [exp] 230 / 7e-78 ND / Potri.003G126200 [exp] 215 / 6e-72 ND / Potri.017G153100 [exp] 146 / 2e-44 ND / Potri.009G009700 [exp] 140 / 2e-42 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028949 pacid=23177213 polypeptide=Lus10028949 locus=Lus10028949.g ID=Lus10028949.BGIv1.0 annot-version=v1.0 ATGCTCTCCTTCTTGGTGGTTTTCTTCCTTACGTGCCGCGTCGAGGCGCAGCAATGCAAGCCGAGTGGGTACATAACAGGGAAGACTCCTCCCCCGGGGC AGTGTAACCAAGGCGAGGAATCCGACTGCTGCAAGAAAGGCAAGCACTACACCACCTTTACTTGTTCCCCTGCCGTGACCCCCCACACCAAGGCCACTCT GACTTGGAACAGCTTCGAGAAAGGAGGGAGCGGTGGGGCTCCATCGGAGTGCGACAACCAGTACCATTCCAACGATAAACCTGTCGTGGCGCTCTCAACC GGATGGTTCGACAAGAAAAGCAGGTGCCTTAATTTCATCAACATTCATGGGAATGGGAAGACTGCCAGGGCCATGGTTGTTGATGAATGTGACTCCAGGA TGGGATGTGATTCGGACCACGACTACCAGCCTCCTTGTCCCAACAACATTGTTGATGCATCGAAAGCGGTCTGGAAAGCGTTGGGAGTGTCTGAAGAAAA CTGGGGAAATCTGGATATTACCTGGTCCGATGCTTGA
AA sequence Show only first row Show all	>Lus10028949 pacid=23177213 polypeptide=Lus10028949 locus=Lus10028949.g ID=Lus10028949.BGIv1.0 annot-version=v1.0 MLSFLVVFFLTCRVEAQQCKPSGYITGKTPPPGQCNQGEESDCCKKGKHYTTFTCSPAVTPHTKATLTWNSFEKGGSGGAPSECDNQYHSNDKPVVALST GWFDKKSRCLNFINIHGNGKTARAMVVDECDSRMGCDSDHDYQPPCPNNIVDASKAVWKALGVSEENWGNLDITWSDA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10028949 [exp]	0	1
AT3G14470			NB-ARC domain-containing disea...		Lus10032781 [exp]	3.0	0.8862
AT5G59310		LTP4	lipid transfer protein 4 (.1)		Lus10028002 [exp]	5.5	0.8101
AT3G02100			UDP-Glycosyltransferase superf...		Lus10003456 [exp]	6.3	0.8592
AT2G31180	MYB	ATMYB14, Myb14a...	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10022021 [exp]	7.7	0.8592
AT4G29340		PRF4	profilin 4 (.1)		Lus10012935 [exp]	8.9	0.8592
AT2G04810			Protein of unknown function (D...		Lus10020538 [exp]	10.2	0.8560
AT3G09290	C2H2ZnF	TAC1	telomerase activator1 (.1)		Lus10021213 [exp]	11.0	0.8540
AT4G25490	AP2_ERF	DREB1B, CBF1, A...	DRE BINDING PROTEIN 1B, C-repe...		Lus10027414 [exp]	11.5	0.8019
AT3G44220			Late embryogenesis abundant (L...		Lus10005214 [exp]	13.6	0.8218
AT3G12910	NAC		NAC (No Apical Meristem) domai...		Lus10015743 [exp]	14.3	0.7850

Compare expression of checked genes

Lus10028949 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.