Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56930 143 / 3e-35 C3HZnF EMB1789 embryo defective 1789, CCCH-type zinc finger family protein (.1) AT1G30460 44 / 0.0004 C3HZnF CPSF30, ATCPSF30 ARABIDOPSIS THALIANA CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 30, cleavage and polyadenylation specificity factor 30 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007473 [exp] 191 / 5e-55 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G148400 [exp] 276 / 1e-79 AT5G56930 156 / 3e-39 embryo defective 1789, CCCH-type zinc finger family protein (.1) Potri.011G089901 [exp] 45 / 0.0002 AT1G30460 613 / 0.0 ARABIDOPSIS THALIANA CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 30, cleavage and polyadenylation specificity factor 30 (.1.2) Potri.010G176300 [exp] 44 / 0.0004 AT3G12680 578 / 0.0 ENHANCER OF AG-4 1, floral homeotic protein (HUA1) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0537 [flax] [poplar] CCCH_zf PF00642 [flax] [poplar] zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Representative CDS sequence Show only first row Show all	>Lus10028950 pacid=23177124 polypeptide=Lus10028950 locus=Lus10028950.g ID=Lus10028950.BGIv1.0 annot-version=v1.0 ATGGAGCAGCAGCAGCGGCAGTTGGTTGAAATCCCTGACGCTTTTAATCCTCGTCGTAAACCACTTCTCAAGAGCGAAACCTACTTTTCACTGCTCCGGC TCTTTTCCTTCTGTGACAACCAACTTCCTCCACTGGTGGTCAAACCAGGTAGCAATAGCAGTGATGAAGCTGACCGGAAGGCTTGCGTTCAAGTGGGCGG TAGTGATGGTGATTGCCTAGCTCAAAAGAGTAAGGCTCATGATCAAACTTTTGAATGTTTGGGTCAGAGAGGGTTTAGCGAAACAAAGGTTTTAATTGAT GAGATTGAGTGTATAATGACAGTGGATGAAGATGAAGATCAGCTGACGCATAATTGCTCTGTACTTGATAAGATTATGGAGTTAGACCATGCGATCAAAG GGAATGATGATTTCAGGGTGGACTGTAATGAGATTCGCGGGGTGACTGCTGGCGAACGGACATGTTTAGATAGTCATCCATTATGTGAAAGCAGGATAGT TAGTGAGCAAACGATTCAGGAAGAAGGTAGCATTCGTGACGTATCTAAACTCTTGGATTCCAAAGTTGCAAGGGCCAGTCAAGAGAGCGGATCTAAGTTA AAAGAGATTATTACATTGGAGAAGTCGAGTATTGCAATGGTTTGTTCGAATGGTATGGTTGTCGGTGATCAGGCTGAAGAGGGAGAGATTTATGTGGACT ACAGGATAGGTGAGGGAGCAGATCTCAAGTCTTGTAAAGATAATAGAAAGTTACAGGGAATCAAGTTAGATGAGAAGCACTTGTCTAGTCATGTACTTGA TGGAACTGGATGTAGGAAACAATCTGCTTCTAGTGCTACTCCCGGAAATCAGTTTCCTTCTTCCTCAAGAGCTGATGGAGTTGCGAATCTTAATAATGGA TATGGAAACAAAGACAAGATCGACATTCCGATGGTGTCTAATCGCAAAACTGTTGTATACGATGATCTTCTATTTACTGAAGGCCCTGAGATGTGGCAGG AAGGAAAGAAAGGCGACAGGGCCAAGGGCCAACGGATCAATTCTGAGACTGCAGGAAGAAACAACAACAACAACAGAGGTGGAGAGGTTGGGAAAGTCAA AGGACATGCAGAACAAAATAAAGGCAGTGTTGTCAAAGTTGATGCTAGATATGCTGACATGTCTGTGGAAAAATCAAGTCAGAATCCAAGTACAAGCCAA GTATCTGCCTGCGGTGATAAGCAGGATGGAAGCCTATGCAAGAACAAGAAAAGGGGTCCTCTGACTGATGCACGAAAGGAATCGAGAAAGCGAAACAAAA GAAAGAAACGAGCAGAAACTAACAAAGAACATGGTGTAAAACGGCTCAAACTACAACCAGTTTCCAATCAGAAGCCAGCAGCAGTCTGCCGCCACTACAT GATGGGCAGATGCCAAGAGGACGAGAAATGCAAATTTTCACATGATGCAATTCCTTTGACGAAATCTAAGCCATGCTCACATTTTGCTCGGGACCAATGC ATTAAGATGGATAAATGTCCATATGACCACCAACTCTCCAAATATCCATGTGACAAATATAAGACGACAGGTTTTTGTATCAGAGGCGAAAAATGCCTAT TTTCTCACAAGGATTTACCAAATGAGGAAGTGTCAACTGTGGGCAGTGCAAAACCAAAGTCCTCAGTTCTGACAGGAAATGTTGGTACCAAGAGGAAGCT GGATATTGTTGACAACTTACATCCGAAGCGGGAAAGTTTAAGTGTTCCAGCGGCAGTTGCTCCTGCAAAGATTCAACAAGTTGGAAGAAAAGATGTGCTT AACGCACTTGGGATAGCACCCACAGGGATTGCTGGAAAATCATTGGTAGGTGTATCCAATTGTACACTGCAGGGGCCTTCATCTGTGGCAACTAAGGATG CACTAAACATCAATCACACAGATCAACATTTATCTGGTTTAGCTGACAAGTCGAACACTCCTTTGAAGGGAACTCCACCTGCTGCTACACCAAAGGGTAT TAACTTCCTATCGTTTGGAAAATCCCCTTTGTTGTTGTCGGCAGCTAAGCAATCAAGTGTCAAGCCTATTTCTTTCGATGGATCCTTGAAGCCACCTTTA TCGAAGATGTCAAGTCCATATAAACAAGTCTCAGATGCAGGAGGTGTTAAACGACCAAGTGAGTTCAATGTGATAATACCGAAAACGAATGAGATGGCTC ATAGAACTGGTCATGTAACTGAATCTCCAAAACATGACACTTTATTTCTGAGGGTAACTTCAGCAGATGATTGCAACAGACATATACAGGCTCATTTACC TTCTAGCTCACATGGTGGAACTTCTATTACTGGAGAAGGCAGTAAAACTGCTTATGATAAACATCATAGCTTGAATGCGACACTACAGGGACTACTATCC TCCTCCTCTGATTCAGGCCAATCCTCAGGCCATAGGGAACTTTTGCAGTTGAAGTATGTACCAAACTCTGTTCAGGATTCATTGATGTCAATGTTAGCTT TTGCAGCAAAGGTCGACTCTGACATGAAGAAGAAGATCTGA
AA sequence Show only first row Show all	>Lus10028950 pacid=23177124 polypeptide=Lus10028950 locus=Lus10028950.g ID=Lus10028950.BGIv1.0 annot-version=v1.0 MEQQQRQLVEIPDAFNPRRKPLLKSETYFSLLRLFSFCDNQLPPLVVKPGSNSSDEADRKACVQVGGSDGDCLAQKSKAHDQTFECLGQRGFSETKVLID EIECIMTVDEDEDQLTHNCSVLDKIMELDHAIKGNDDFRVDCNEIRGVTAGERTCLDSHPLCESRIVSEQTIQEEGSIRDVSKLLDSKVARASQESGSKL KEIITLEKSSIAMVCSNGMVVGDQAEEGEIYVDYRIGEGADLKSCKDNRKLQGIKLDEKHLSSHVLDGTGCRKQSASSATPGNQFPSSSRADGVANLNNG YGNKDKIDIPMVSNRKTVVYDDLLFTEGPEMWQEGKKGDRAKGQRINSETAGRNNNNNRGGEVGKVKGHAEQNKGSVVKVDARYADMSVEKSSQNPSTSQ VSACGDKQDGSLCKNKKRGPLTDARKESRKRNKRKKRAETNKEHGVKRLKLQPVSNQKPAAVCRHYMMGRCQEDEKCKFSHDAIPLTKSKPCSHFARDQC IKMDKCPYDHQLSKYPCDKYKTTGFCIRGEKCLFSHKDLPNEEVSTVGSAKPKSSVLTGNVGTKRKLDIVDNLHPKRESLSVPAAVAPAKIQQVGRKDVL NALGIAPTGIAGKSLVGVSNCTLQGPSSVATKDALNINHTDQHLSGLADKSNTPLKGTPPAATPKGINFLSFGKSPLLLSAAKQSSVKPISFDGSLKPPL SKMSSPYKQVSDAGGVKRPSEFNVIIPKTNEMAHRTGHVTESPKHDTLFLRVTSADDCNRHIQAHLPSSSHGGTSITGEGSKTAYDKHHSLNATLQGLLS SSSDSGQSSGHRELLQLKYVPNSVQDSLMSMLAFAAKVDSDMKKKI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G56930	C3HZnF	EMB1789	embryo defective 1789, CCCH-ty...		Lus10028950 [exp]	0	1
AT5G15020		SNL2	SIN3-like 2 (.1.2)		Lus10032181 [exp]	1.7	0.9362
AT2G16950		ATTRN1	transportin 1 (.1.2)		Lus10023999 [exp]	2.0	0.9128
AT1G08600		ATRX, CHR20	P-loop containing nucleoside t...		Lus10003572 [exp]	2.0	0.9343
AT5G17930			MIF4G domain-containing protei...		Lus10014048 [exp]	2.2	0.9127
AT5G23080		TGH	TOUGH, SWAP (Suppressor-of-Whi...		Lus10009612 [exp]	2.4	0.9072
AT1G65470		NFB2, FAS1	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10003491 [exp]	3.7	0.9024
AT1G32750		GTD1, TAF1, HAF...	TBP-ASSOCIATED FACTOR 1, HISTO...		Lus10027579 [exp]	3.9	0.9169
AT3G23900			RNA recognition motif (RRM)-co...		Lus10043159 [exp]	4.7	0.8910
AT5G46400		ATPRP39-2 ,AT P...	Tetratricopeptide repeat (TPR)...		Lus10015257 [exp]	4.9	0.8909
AT5G16270		SYN4, ATRAD21.3	ARABIDOPSIS HOMOLOG OF RAD21 3...		Lus10026862 [exp]	4.9	0.9023

Compare expression of checked genes

Lus10028950 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.