Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60580 76 / 2e-15 C2H2ZnF C2H2-like zinc finger protein (.1) AT4G16610 61 / 7e-11 C2H2ZnF C2H2-like zinc finger protein (.1) AT1G02030 56 / 1e-08 C2H2ZnF C2H2-like zinc finger protein (.1) AT2G45120 54 / 6e-08 C2H2ZnF C2H2-like zinc finger protein (.1) AT1G26610 47 / 1e-05 C2H2ZnF C2H2-like zinc finger protein (.1) AT1G26590 46 / 2e-05 C2H2ZnF C2H2-like zinc finger protein (.1) AT5G67450 44 / 7e-05 C2H2ZnF AZF1 zinc-finger protein 1 (.1) AT2G37430 43 / 7e-05 C2H2ZnF ZAT11 C2H2 and C2HC zinc fingers superfamily protein (.1) AT3G49930 41 / 0.0004 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT4G35280 42 / 0.0005 C2H2ZnF DAZ2 DUO1-ACTIVATED ZINC FINGER 2, C2H2-like zinc finger protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007474 [exp] 330 / 2e-112 AT3G60580 99 / 7e-24 C2H2-like zinc finger protein (.1) Lus10004724 [exp] 138 / 3e-38 AT3G60580 108 / 2e-27 C2H2-like zinc finger protein (.1) Lus10008523 [exp] 129 / 8e-35 AT3G60580 107 / 3e-27 C2H2-like zinc finger protein (.1) Lus10015740 [exp] 54 / 5e-08 AT1G02030 104 / 3e-25 C2H2-like zinc finger protein (.1) Lus10003463 [exp] 53 / 2e-07 AT1G26610 112 / 2e-28 C2H2-like zinc finger protein (.1) Lus10036890 [exp] 47 / 2e-06 AT1G26610 82 / 5e-19 C2H2-like zinc finger protein (.1) Lus10021637 [exp] 49 / 3e-06 AT1G02030 99 / 8e-23 C2H2-like zinc finger protein (.1) Lus10009278 [exp] 48 / 3e-06 AT2G45120 161 / 2e-48 C2H2-like zinc finger protein (.1) Lus10000679 [exp] 49 / 4e-06 AT2G45120 91 / 3e-20 C2H2-like zinc finger protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G157700 [exp] 144 / 2e-40 AT3G60580 159 / 2e-46 C2H2-like zinc finger protein (.1) Potri.002G143800 [exp] 97 / 1e-22 AT3G60580 199 / 1e-61 C2H2-like zinc finger protein (.1) Potri.014G066100 [exp] 96 / 4e-22 AT3G60580 176 / 1e-52 C2H2-like zinc finger protein (.1) Potri.003G077200 [exp] 95 / 7e-22 AT3G60580 151 / 2e-43 C2H2-like zinc finger protein (.1) Potri.001G125900 [exp] 50 / 9e-07 AT3G60580 98 / 1e-23 C2H2-like zinc finger protein (.1) Potri.008G094500 [exp] 50 / 2e-06 AT1G26610 223 / 3e-67 C2H2-like zinc finger protein (.1) Potri.010G159600 [exp] 49 / 4e-06 AT1G26610 298 / 6e-96 C2H2-like zinc finger protein (.1) Potri.017G091800 [exp] 46 / 3e-05 AT5G67450 77 / 9e-16 zinc-finger protein 1 (.1) Potri.011G168900 [exp] 44 / 0.0001 AT2G28200 64 / 2e-11 C2H2-type zinc finger family protein (.1) Potri.004G118100 [exp] 43 / 0.0003 AT3G49930 80 / 9e-17 C2H2 and C2HC zinc fingers superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028951 pacid=23177162 polypeptide=Lus10028951 locus=Lus10028951.g ID=Lus10028951.BGIv1.0 annot-version=v1.0 ATGGAGAGCAGGCGCCACAAATGCAAGCTCTGTTTCAGAGCCTTCCCTAACGGCAGAGCTTTAGGCGGCCACATGAAATCTCACAGCTTCCTCCACTCTA CATTTCCTCTCCCTCCTCCCCGTCGTAACCAACTCGGTCACGACCCGGACGCCACTGAGTCGTCTTCTTCTTCCTCCTCTTATTCCTCATCGGAAGATGA AACAGAACTGAAATTGCAGAGTATCGTCAAGAGCGACGACGTCGTTTACGGGCTGAGGGAGAATCCGCGGAAGAGCTTCCGGGTCGCGGATCCCGAGTTC TCCTTCGCCGGATCCTCCTCCGCCCTCGTCCAAGACAGGGGGAGTGAGTGTGCTGAGTCGAGGAACCCGGCTACCCGGCGGCGATCCAAGCGGAAGTTCC GGAAACCGTGGGCTAATTCGGATTCGCCGGTGAGCTCAGTCTCCTCCGATGCTGCCGACGAGGACGTGGCGATGTGTCTTGTGATGCTGTCCAGGGATGT GAACAACTGGAGGATGATGAAGAAGCAAAGATTCGACAACAATGTCGACGACGTGGGTTTCGATAATTTGAAAAAAAACGATGAAGAAATCAACGAGGAA GAAGAAGAAGAAGTTCACGAGATGCGCGGGATTTGCGGGAAGAAGAAGCTGAAATGCGAGAAATGTATGAAACAGTTCCGATCTCCAAAAGCGTTGATTT CCCACCGTCGGATTTGCTCCCTTAACAACAACAAAGGTAATCATCACCACCTCCGGAAACTTATCTCCGACGAAGAGAGGATTTTCCAATGCCCCTATTG CTTCAAGGTGTTCGGGTCGGGTCAAGCTCTGGGCGGGCACAAGAGATCCCATCTCTCCTCCCGCACCGGTTCTTACCCGTCAGCGGTGGATCCTCCTCCT CCTTCGCCTTCGCCGCCGCCTTCTTGCAGTTTGTGGGATCTGAACTTGCCGGCAGCGGTGGAAGAGGACGACGAGGAGTTCAGTGTAGTTTCCGATGCAT AA
AA sequence Show only first row Show all	>Lus10028951 pacid=23177162 polypeptide=Lus10028951 locus=Lus10028951.g ID=Lus10028951.BGIv1.0 annot-version=v1.0 MESRRHKCKLCFRAFPNGRALGGHMKSHSFLHSTFPLPPPRRNQLGHDPDATESSSSSSSYSSSEDETELKLQSIVKSDDVVYGLRENPRKSFRVADPEF SFAGSSSALVQDRGSECAESRNPATRRRSKRKFRKPWANSDSPVSSVSSDAADEDVAMCLVMLSRDVNNWRMMKKQRFDNNVDDVGFDNLKKNDEEINEE EEEEVHEMRGICGKKKLKCEKCMKQFRSPKALISHRRICSLNNNKGNHHHLRKLISDEERIFQCPYCFKVFGSGQALGGHKRSHLSSRTGSYPSAVDPPP PSPSPPPSCSLWDLNLPAAVEEDDEEFSVVSDA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G60580	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10028951 [exp]	0	1
AT3G60580	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10007474 [exp]	1.0	0.9418
AT3G57880			Calcium-dependent lipid-bindin...		Lus10016280 [exp]	4.2	0.9356
AT3G14920			Peptide-N4-(N-acetyl-beta-gluc...		Lus10017926 [exp]	5.1	0.9140
AT4G13950		RALFL31	ralf-like 31 (.1)		Lus10022561 [exp]	7.3	0.8939
AT1G71830		ATSERK1, SERK1	somatic embryogenesis receptor...		Lus10028716 [exp]	11.5	0.9141
AT3G07390		AIR12	Auxin-Induced in Root cultures...		Lus10025879 [exp]	13.4	0.9256
AT3G25290			Auxin-responsive family protei...		Lus10025877 [exp]	15.2	0.9319
AT4G23740			Leucine-rich repeat protein ki...		Lus10032351 [exp]	15.5	0.8949
AT2G01950		VH1, BRL2	VASCULAR HIGHWAY 1, BRI1-like ...		Lus10039132 [exp]	18.4	0.9103
AT4G11950			Protein of unknown function (D...		Lus10024479 [exp]	20.1	0.9132

Compare expression of checked genes

Lus10028951 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.