Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47470 449 / 1e-158 Nodulin MtN21 /EamA-like transporter family protein (.1) AT4G16620 318 / 4e-107 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G13670 150 / 4e-42 nodulin MtN21 /EamA-like transporter family protein (.1) AT3G53210 150 / 5e-42 nodulin MtN21 /EamA-like transporter family protein (.1) AT3G18200 147 / 6e-41 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT1G75500 144 / 2e-39 WAT1 Walls Are Thin 1 (.1.2) AT2G39510 144 / 2e-39 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G30420 142 / 9e-39 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G37460 141 / 1e-38 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G07050 138 / 4e-37 nodulin MtN21 /EamA-like transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007475 [exp] 680 / 0 AT5G47470 449 / 1e-158 Nodulin MtN21 /EamA-like transporter family protein (.1) Lus10004725 [exp] 537 / 0 AT5G47470 430 / 3e-151 Nodulin MtN21 /EamA-like transporter family protein (.1) Lus10000330 [exp] 537 / 0 AT5G47470 429 / 1e-150 Nodulin MtN21 /EamA-like transporter family protein (.1) Lus10038959 [exp] 144 / 1e-39 AT3G18200 497 / 2e-177 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10040311 [exp] 143 / 3e-39 AT2G39510 482 / 2e-171 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10023432 [exp] 143 / 3e-39 AT2G39510 480 / 2e-170 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10008708 [exp] 141 / 2e-38 AT5G07050 552 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10027251 [exp] 138 / 3e-37 AT3G18200 493 / 2e-175 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10041634 [exp] 137 / 1e-36 AT5G07050 557 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G157600 [exp] 471 / 2e-167 AT5G47470 442 / 6e-156 Nodulin MtN21 /EamA-like transporter family protein (.1) Potri.003G077300 [exp] 462 / 3e-164 AT5G47470 431 / 1e-151 Nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G233600 [exp] 157 / 2e-44 AT1G75500 584 / 0.0 Walls Are Thin 1 (.1.2) Potri.007G017800 [exp] 150 / 6e-42 AT1G75500 414 / 4e-144 Walls Are Thin 1 (.1.2) Potri.010G209200 [exp] 149 / 1e-41 AT2G39510 503 / 3e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.018G099500 [exp] 148 / 2e-41 AT4G30420 402 / 7e-140 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.015G042900 [exp] 147 / 7e-41 AT3G18200 476 / 4e-169 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.006G177600 [exp] 147 / 7e-41 AT4G30420 375 / 4e-129 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.015G073200 [exp] 145 / 3e-40 AT5G40240 254 / 4e-82 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.016G031400 [exp] 145 / 1e-39 AT5G07050 504 / 4e-179 nodulin MtN21 /EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10028952 pacid=23177153 polypeptide=Lus10028952 locus=Lus10028952.g ID=Lus10028952.BGIv1.0 annot-version=v1.0 ATGGTTATGAAGAAGGATAATGTATTGGAAGAAATAGGGATCGTGGGAGGGCTGATATCGGTCCAATTCGTGTACGCTGGGAATTCGATTCTACTGAGCT ATTTGATGTCGGTCGGGCTTACTCCTCTCACCATTGTTATCTTCTCCACTTTCGCCACCTTCCTCGTCGTCTCCCCTTTCGCTTTCTGTTTCGAAAGGAA GAGATGGCCTACCAGATTCAGTTTCAAGTTTGTAACCCAGCTGCTTCTCATTTCCTTTGGAGGAGTTACACTGTTCCAATCTTTCTTCCTGAAGGGAATT AAGCTGACTTCCCCTGCTCTGGCAACAGCCATGCCTAACCTTGCCCCTGCATTAATTTTCATCATTGCTTGGACACTTGGGCTAGAGAGAATTAGATTTG GGTGCATATACAGCAAGATCAAGATCATTGGCACACTGTTATGTGTCGTTGGTGCCTTGACAATGAGCCTCATGCACAGCAGATCCACCAAAAACGATGC TTCCTTAATCTCCTCCCCCACCACCGACCACCACGAGATCGAAAAAATCGACAAGGAGAAGCTCCTCGGTTGCCTCTACCTCATAGCCGCCGTCTTTGTC CTCTCTAGCAATGTCGTCCTACAGGCAACAATATTGAGCGATTTTCCGGCACCAATGTCTCTATGTGCCATAACGTCGTTGATTGGTGTGGTGATAACTG CGATCGTGCAACTGCTCCAGGGCCAAACGACGTCGGATATCTTCTTCCCGCTCGTAGATGTCGGTGATCTCATTGGCTATTCTTTACTGGGAGGTGCAGT GGGAGGAGCATGTGTGAGCTTCAATGGGTGGGCAATGAAGAAGAGAGGTCCAGTACTTGTGTCCATGTTCAGCCCCATCGGAACAGTTATCTCAGTTGTG CTGTCAGTCATCACATTAGGGGAGACCATTGACGTAGGGAGCCTTTGCGGGATGTTGCTGATGTTCACGGGACTGTACTTGTTCTTGTGGGGGAAAGGGA AAGAAGGATACTCAGATGATCCATTGCAAAGTAGTGAGTTCGATCCACAGAAGCCTCTCCTAAGCTAA
AA sequence Show only first row Show all	>Lus10028952 pacid=23177153 polypeptide=Lus10028952 locus=Lus10028952.g ID=Lus10028952.BGIv1.0 annot-version=v1.0 MVMKKDNVLEEIGIVGGLISVQFVYAGNSILLSYLMSVGLTPLTIVIFSTFATFLVVSPFAFCFERKRWPTRFSFKFVTQLLLISFGGVTLFQSFFLKGI KLTSPALATAMPNLAPALIFIIAWTLGLERIRFGCIYSKIKIIGTLLCVVGALTMSLMHSRSTKNDASLISSPTTDHHEIEKIDKEKLLGCLYLIAAVFV LSSNVVLQATILSDFPAPMSLCAITSLIGVVITAIVQLLQGQTTSDIFFPLVDVGDLIGYSLLGGAVGGACVSFNGWAMKKRGPVLVSMFSPIGTVISVV LSVITLGETIDVGSLCGMLLMFTGLYLFLWGKGKEGYSDDPLQSSEFDPQKPLLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47470			Nodulin MtN21 /EamA-like trans...		Lus10028952 [exp]	0	1

Compare expression of checked genes

Lus10028952 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.