Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47460 539 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G33990 271 / 4e-81 EMB2758 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G02330 271 / 1e-80 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G13600 265 / 6e-80 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G44230 259 / 6e-78 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G29760 260 / 1e-77 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G15300 256 / 1e-77 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G39530 261 / 5e-77 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G27610 259 / 2e-76 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G02750 257 / 3e-76 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007476 [exp] 391 / 6e-134 AT5G47460 187 / 1e-55 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10032091 [exp] 300 / 4e-92 AT3G02330 925 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014594 [exp] 299 / 7e-92 AT3G02330 901 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10009269 [exp] 288 / 9e-89 AT2G13600 874 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015898 [exp] 281 / 2e-85 AT2G13600 899 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10033713 [exp] 271 / 6e-83 AT1G03540 726 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10035164 [exp] 273 / 1e-81 AT3G02010 962 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10021232 [exp] 268 / 8e-81 AT2G33680 818 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031994 [exp] 270 / 2e-80 AT3G02010 957 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G086100 [exp] 293 / 8e-92 AT5G15300 675 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G258766 [exp] 283 / 7e-88 AT1G06150 705 / 0.0 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.004G047800 [exp] 291 / 2e-87 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G466066 [exp] 283 / 2e-85 AT4G33990 1067 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G021700 [exp] 281 / 2e-85 AT3G47840 796 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G111300 [exp] 282 / 2e-84 AT3G02330 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G058900 [exp] 283 / 7e-84 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G019500 [exp] 273 / 5e-83 AT2G22410 791 / 0.0 SLOW GROWTH 1 (.1) Potri.013G145000 [exp] 271 / 5e-83 AT1G03540 721 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.002G155100 [exp] 274 / 3e-82 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10028953 pacid=23177172 polypeptide=Lus10028953 locus=Lus10028953.g ID=Lus10028953.BGIv1.0 annot-version=v1.0 ATGCCAGTTCTGGTCCTGAAGAGAGCACTGCGCAACCTTCACTGCAAACGAATCTCCACCTTAACAGACGCAAGCTTCTCAGTTCCCACCACCTCTCACA AACTCCTTATCGAATCATGGATCACCCGGATCTCCTCCCTGGCTCAAGTCGGGTCGGGTTCCGAACATGCCCTTTTACGCGCGTCGGAGCTGCTCAATTT TGCCGCCACAGAGGACTCAACCGGGCATGCTCTGGTTCATCTTATCCGCGCTTCCACCGACTTGGGTCTTGAATCTTACTGCCGGAAGCTGCATTGCTAC GTTATCAAATGTGGGCTCACCTCCGACGTCTTGGTTTCCACCGCTTTGATGAGGTTCTACGGAGCTATGAAGTTGATAGGTGTTGCTCACCACGTGTTCG ACGAAATTACGGTGCCAAATGTGGTTTCTTGGAATACTCTTATTTCAGGGTACGTACGTTCAGGCCAGTTCAAGCAAGCTTTGGGGTTGTTTTTACAGCT TGAATGTTCCGAGGTCTGCTCGGATGCTTACTCGCTTACAGCAGCTTTATCAGCTTGTGGGCAGCTTGGTATGCTACAGTTTGGGAGGTCAGTTCACTGC AAGATCGTTAAAGATGGATTTGAATGCGGTGTTTTCGTTCCGAATTGCTTGATTGACATGTATGGGAAATGTGGATGGATCGAAGAGGCGATTCGGGTGT TTAACGGAATGGTCGAGAAGGACACGATTTCGTGGAACTCAATTATAGCAGCGAGTGGTAGAAACTCTAGGCTTGATCTGGCCAGCAGTTTTTTCTTGCA GATGCCTCAGCCTGATACTGTCTCGTACAATGAACTGATCAATGGGATAGCTCAATTCGGTCATATAGAAGAAGCTGTGGAGATTTTGTCTACAATGCCA AACCCGAATTCATCTTCTTGGAACTCCATTCTTACAGGGTATGTCAATAGAAACAGATCACGGGAAGCGATGGAATTCTTCACAATGATGCACTCGAGTA ACGTTGGAATGGACGAATACACGTATTCGAGTTTGCTAAGTGGAATCGCTAGTCTAGCTGCGTTGAGATGGGGAACGGTAATCCACTGTTGCATCGTAAA ACGTGGTCTCTCAACAAGAGTGGTTGTCGGGAGTTCGGTGATCGACATGTACGCTAAATGCGGTGAAGTTAGTAACGCTGATTCGATATTCCGATCGTTG CCACATAAGAATTTGGTTACGTGGAACGCGATCATAGCAGGATACGCTCAGGGCGGGGATTCGGAAAAGGTGATACAATTGTTTGAGGAGTTGAAGAAGG CGAAGGGTCTGCATCCCGATTGGATCACATATCTAAACGTGTTAGCTTCATGCTCGAACGCTAGAGTGCCACTCGAGACAGCAACTCGATATTTCGAATC GATGATCAACGATCACGGAATCATACCATCCCCCGAGCACTGCTGTTCGATGATTCGTCTCCTGGGACAAAATGGAGAGGTTCGTTCTACTTTGAGGATG ATTTACGACTTTAGATTCGAGTCGTGCGGAGTGGTTTGGAGGGCGTTGCTTGGAGCTTGCGGAACATGTGCGAATTCGCGGGTTGCTAAGATTGCAGCTG CAAAAGTGATTGAACTGGAAGGTGACGATGATTATGTTTATGTAATGCTGTCCAATATTTTTGCCTCTTGTGGCAAATGGGGAGATGTAAAGAAGGTGAG GAATCTCATGTGGAAGAACAGAGTGGCAAAAGAAGTTGGCTGCAGTTGGATTTGA
AA sequence Show only first row Show all	>Lus10028953 pacid=23177172 polypeptide=Lus10028953 locus=Lus10028953.g ID=Lus10028953.BGIv1.0 annot-version=v1.0 MPVLVLKRALRNLHCKRISTLTDASFSVPTTSHKLLIESWITRISSLAQVGSGSEHALLRASELLNFAATEDSTGHALVHLIRASTDLGLESYCRKLHCY VIKCGLTSDVLVSTALMRFYGAMKLIGVAHHVFDEITVPNVVSWNTLISGYVRSGQFKQALGLFLQLECSEVCSDAYSLTAALSACGQLGMLQFGRSVHC KIVKDGFECGVFVPNCLIDMYGKCGWIEEAIRVFNGMVEKDTISWNSIIAASGRNSRLDLASSFFLQMPQPDTVSYNELINGIAQFGHIEEAVEILSTMP NPNSSSWNSILTGYVNRNRSREAMEFFTMMHSSNVGMDEYTYSSLLSGIASLAALRWGTVIHCCIVKRGLSTRVVVGSSVIDMYAKCGEVSNADSIFRSL PHKNLVTWNAIIAGYAQGGDSEKVIQLFEELKKAKGLHPDWITYLNVLASCSNARVPLETATRYFESMINDHGIIPSPEHCCSMIRLLGQNGEVRSTLRM IYDFRFESCGVVWRALLGACGTCANSRVAKIAAAKVIELEGDDDYVYVMLSNIFASCGKWGDVKKVRNLMWKNRVAKEVGCSWI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47460			Pentatricopeptide repeat (PPR)...		Lus10028953 [exp]	0	1
AT1G34160			Tetratricopeptide repeat (TPR)...		Lus10004197 [exp]	1.4	0.8330
AT5G59600			Tetratricopeptide repeat (TPR)...		Lus10016511 [exp]	2.2	0.8343
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10038396 [exp]	5.7	0.8281
AT5G12100			pentatricopeptide (PPR) repeat...		Lus10023863 [exp]	8.0	0.8210
AT5G43940		PAR2, ATGSNOR1,...	PARAQUAT RESISTANT 2, sensitiv...		Lus10022853 [exp]	8.1	0.7881
AT1G07780		TRP6, PAI1	TRANSIENT RECEPTOR POTENTIAL 6...		Lus10028971 [exp]	8.1	0.7927
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10031423 [exp]	8.1	0.8147
AT5G08305			Pentatricopeptide repeat (PPR)...		Lus10010183 [exp]	9.0	0.7985
AT5G47460			Pentatricopeptide repeat (PPR)...		Lus10007476 [exp]	9.2	0.7521
AT5G66500			Tetratricopeptide repeat (TPR)...		Lus10041770 [exp]	12.6	0.8157

Compare expression of checked genes

Lus10028953 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.