Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16640 357 / 4e-122 Matrixin family protein (.1) AT2G45040 330 / 7e-112 Matrixin family protein (.1) AT1G70170 268 / 4e-87 MMP matrix metalloproteinase (.1) AT1G59970 248 / 1e-79 Matrixin family protein (.1) AT1G24140 239 / 5e-76 Matrixin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007478 [exp] 591 / 0 AT4G16640 345 / 2e-117 Matrixin family protein (.1) Lus10004728 [exp] 434 / 4e-152 AT4G16640 350 / 2e-119 Matrixin family protein (.1) Lus10030662 [exp] 266 / 1e-86 AT1G59970 338 / 9e-115 Matrixin family protein (.1) Lus10028180 [exp] 260 / 3e-85 AT2G45040 278 / 9e-93 Matrixin family protein (.1) Lus10010719 [exp] 200 / 3e-61 AT1G70170 305 / 3e-102 matrix metalloproteinase (.1) Lus10014512 [exp] 191 / 3e-58 AT1G59970 221 / 6e-70 Matrixin family protein (.1) Lus10032175 [exp] 190 / 7e-58 AT1G59970 224 / 3e-71 Matrixin family protein (.1) Lus10039464 [exp] 188 / 3e-57 AT1G24140 224 / 3e-71 Matrixin family protein (.1) Lus10005605 [exp] 187 / 1e-56 AT1G24140 223 / 9e-71 Matrixin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G157500 [exp] 408 / 3e-142 AT2G45040 349 / 2e-119 Matrixin family protein (.1) Potri.003G077400 [exp] 393 / 8e-135 AT2G45040 330 / 1e-110 Matrixin family protein (.1) Potri.014G058200 [exp] 353 / 9e-121 AT2G45040 358 / 3e-123 Matrixin family protein (.1) Potri.015G103900 [exp] 296 / 5e-98 AT1G24140 381 / 3e-131 Matrixin family protein (.1) Potri.012G104600 [exp] 281 / 3e-92 AT1G24140 393 / 5e-136 Matrixin family protein (.1) Potri.013G100400 [exp] 229 / 8e-73 AT1G59970 247 / 4e-80 Matrixin family protein (.1) Potri.008G027600 [exp] 195 / 1e-59 AT1G59970 213 / 8e-67 Matrixin family protein (.1) Potri.013G033200 [exp] 192 / 2e-58 AT1G24140 246 / 2e-79 Matrixin family protein (.1) Potri.019G073800 [exp] 190 / 9e-58 AT1G70170 223 / 1e-70 matrix metalloproteinase (.1) Potri.019G073700 [exp] 187 / 1e-56 AT1G59970 213 / 7e-67 Matrixin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0244 [flax] [poplar] PGBD PF01471 [flax] [poplar] PG_binding_1 Putative peptidoglycan binding domain CL0126 [flax] [poplar] Peptidase_MA PF00413 [flax] [poplar] Peptidase_M10 Matrixin
Representative CDS sequence Show only first row Show all	>Lus10028955 pacid=23177142 polypeptide=Lus10028955 locus=Lus10028955.g ID=Lus10028955.BGIv1.0 annot-version=v1.0 ATGATTCAGTTATTCGGTTATTTCCGTTTCGGCTTCTTCCTCCTCTTCCTCTGCCTTTCCCGCTCTTCCTTATTAGTTCCCGCCAGAATCTTACCGGACG GCGTCGTAACTGTCGTAACGGACAACAACGACAACAAGAACAACGCATCCACGTGGCAGAATTTCGTTCGATTGATTGACGCCGGCAAAGGCAGCGAGCT CACCGGCGTCTCCGATCTCAAGCGATACTTCCACCGGTTCGGCTACATAAATTCCAACTTCCCTAATTTCACTGATTTGTTCGACGGCGAATTGGAAGCC GCCATCGGAGCGTACCAGCGCAACCTCGGATTACACGTCACCAAAAAGTTGGACTCTGACACAGTCAACACCATCATGTCCCCTCGCTGCGGCGTCGGAG ACATATCTCCGACGCCTCCGGCGACGCAGGGGATCCACGCAACGAAGCGATTCGCGTACTTCAACGGGCGGCCGAGGTGGTACAGGCCGGGGGAGCCGAT GATGCTAACCTACGCCTTCTCTCAGGAGCACACGATCACGTACATAAGCCTGAGCGAGATAAAGAAGGTGTTTCGTCGGGCGTTCGGGCGGTGGTCGTCG GCGATTCCGGTGAGCTTCCGGGAGGTGGAGGATTACGGGTCGGCGGATATCCGGATCGGGTGGTACAGAGGCGACCACGGCGACGGGGAGGAGTTCGACG GGGTGTTGGGGGTTTTGGCCCACGCGTTCTCGCCGGAGAACGGGAGGCTCCACCTGGACGCGGCGGAGACGTGGGCGGCAGAGGCGGACTACAAGTCGAA CGTGGCCGTGGACTTGGAATCGGTGGCGACGCACGAGATCGGTCACGTGCTGGGCCTGGCCCACAGCTCGGTGAAGGAAGCGGTGATGTACCCGAGTCTG AGCCCGAGGACGAAGAAAGTTGAGCTCAAGGTTGATGACGTCGAAGGTATCCAGGCGCTGTACGGCTCCAATCCAAACTTCAGGTTTGATACGTTATTGG CGTCGGAGAATTCGACGGATACCGGTGGAGGGATTCGCCGGCCGGTGGCGGCGGCGGCGTGGACTCATGTCGCCGTCTTGGTGGGCCTCTCCGGCCTGTT GCTCTCATGTATATAA
AA sequence Show only first row Show all	>Lus10028955 pacid=23177142 polypeptide=Lus10028955 locus=Lus10028955.g ID=Lus10028955.BGIv1.0 annot-version=v1.0 MIQLFGYFRFGFFLLFLCLSRSSLLVPARILPDGVVTVVTDNNDNKNNASTWQNFVRLIDAGKGSELTGVSDLKRYFHRFGYINSNFPNFTDLFDGELEA AIGAYQRNLGLHVTKKLDSDTVNTIMSPRCGVGDISPTPPATQGIHATKRFAYFNGRPRWYRPGEPMMLTYAFSQEHTITYISLSEIKKVFRRAFGRWSS AIPVSFREVEDYGSADIRIGWYRGDHGDGEEFDGVLGVLAHAFSPENGRLHLDAAETWAAEADYKSNVAVDLESVATHEIGHVLGLAHSSVKEAVMYPSL SPRTKKVELKVDDVEGIQALYGSNPNFRFDTLLASENSTDTGGGIRRPVAAAAWTHVAVLVGLSGLLLSCI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16640			Matrixin family protein (.1)		Lus10028955 [exp]	0	1
AT4G16640			Matrixin family protein (.1)		Lus10007478 [exp]	1.0	0.9600
					Lus10031407 [exp]	2.4	0.9461
AT3G22600			Bifunctional inhibitor/lipid-t...		Lus10041195 [exp]	3.5	0.9369
AT3G22600			Bifunctional inhibitor/lipid-t...		Lus10022066 [exp]	7.5	0.9454
AT1G05450			Bifunctional inhibitor/lipid-t...		Lus10041196 [exp]	7.7	0.9449
AT4G02830			unknown protein		Lus10042573 [exp]	10.2	0.9408
AT1G54540			Late embryogenesis abundant (L...		Lus10031888 [exp]	13.4	0.9340
AT3G25640			Protein of unknown function, D...		Lus10034386 [exp]	14.4	0.9347
					Lus10011553 [exp]	15.0	0.9219
AT5G49350			Glycine-rich protein family (....		Lus10016857 [exp]	15.2	0.9190

Compare expression of checked genes

Lus10028955 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.