Plant FIBer expression Database

Lus10028956 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G65660 804 / 0 SMP1 SWELLMAP 1, Pre-mRNA splicing Prp18-interacting factor (.1)
AT4G37120 769 / 0 SMP2 SWELLMAP 2, Pre-mRNA splicing Prp18-interacting factor (.1)
AT3G45950 495 / 1e-173 Pre-mRNA splicing Prp18-interacting factor (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10022931
[exp]
925 / 0 AT1G65660 895 / 0.0 SWELLMAP 1, Pre-mRNA splicing Prp18-interacting factor (.1)
Lus10024887
[exp]
922 / 0 AT1G65660 895 / 0.0 SWELLMAP 1, Pre-mRNA splicing Prp18-interacting factor (.1)
Lus10030817
[exp]
301 / 2e-89 AT1G70060 1426 / 0.0 SIN3-like 4 (.1)
Lus10007480
[exp]
169 / 6e-51 AT4G37120 170 / 6e-52 SWELLMAP 2, Pre-mRNA splicing Prp18-interacting factor (.1)
Lus10007479
[exp]
121 / 5e-33 AT1G65660 124 / 5e-35 SWELLMAP 1, Pre-mRNA splicing Prp18-interacting factor (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G048200
[exp]
843 / 0 AT1G65660 830 / 0.0 SWELLMAP 1, Pre-mRNA splicing Prp18-interacting factor (.1)
Potri.012G064100
[exp]
836 / 0 AT1G65660 801 / 0.0 SWELLMAP 1, Pre-mRNA splicing Prp18-interacting factor (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF11708 Slu7 Pre-mRNA splicing Prp18-interacting factor
Representative CDS sequence
>Lus10028956 pacid=23177324 polypeptide=Lus10028956 locus=Lus10028956.g ID=Lus10028956.BGIv1.0 annot-version=v1.0
ATGGCGACTGCTTCAGGTGCCTTCAAGTCCAGAGAGGATCATAGGAAACAGATGGAATTGGAGGAGGCGCGTAAAGCTGGTCTTGCTCCTGCCGAAGTTG
ATGAAGATGGGAAAGAGATCAATCCTCATATTCCTCAGTATATGTCTTCAGCCCCTTGGTATCTTAATCCTGACACGCCTAGTTTGAAACATCAAAGGAA
ATGGAAGCCGGATCCGATCTATACGAAATCTTGGTATGATAGAGGTGCCAAAGTGTATCAGGCGAATAAGTACAGGAAAGGTGCTTGTCAGAACTGTGGA
GCCGAGACGCATGATTTGAAATCTTGCATGGAGAGGCCAAGGAAAGTTGGGGCAAAGTGGACTAACATGCACATTGCTCCTGATGAAAAGATCGAGACTT
TCGAGCTTGATTACGATGGCAAGCGTGATCGCTGGAATGGGTATGATGCAGCGAGTTATGCACTTGTTGTTGAGCGGTATGAAGCTCGAGATGCTGCCAG
GAGTCGTTATGTGAAGGAGCAGCAGCTTAAGAAGCTGGAGGAGAGAAACAATGGCCAGACTGCTGAGGATGTTAGTGATGAGGACAATGACGAAGATGAT
TTGAGGGTGGATGAAGCAAAAGTTGACGAGTCGAAGCAAATGGACTTTGCTAAGGTGGAGAAGCGTGTTAGGACAACTGGTGGTGGTAGTACTGGAACTG
TGAGGAACTTGCGTATTCGGGAAGATACAGCAAAGTATCTGTTGAATCTTGATGTCAATTCTGCTTACTATGATCCGAAAACACGTTCCATGCGTGAGGA
CCCTCTCCCAGATGCCGATCCTAATGAGAAGTTCTATTTGGGAGACAATCAGTATAGAAATAGTGGTCAAGCTGAGGAGTTCAAGCAGCTCAACGTCCAC
GCTTGGGAAGCTTTTGATAAGGGTCAAGATATTCACATGCAAGCTGCTCCTTCTCAAGCAGAGCTGCTTTATAAGAATTTTAAGGTGATAAAGGAGAAAC
TGGAGACTCAAACAAAAGACCAAATGCTTGAGAAGTATGGGAATGCTGCTAGCCTAGACCCCATTCCAAAAGAACTTCTGCTTGGACAGAGCGAACGTCA
AGTCGAGTATGATCGTGCTGGAAGATTTATCAAGGGACAGGAAGTTGCGCTTCCGAAAAGCAAGTACGAAGAAGATGTCTACGTTAACAACCACACAAGT
GTTTGGGGGTCATGGTGGAAGGATCATCAGTGGGGATACAAATGCTGTAGACAGAGCATTCGAAACAGTTACTGCACTGGCGCCGCTGGAATCAAGGCAG
CTGAGGCTGCAACGGATCTGATGAAAGCAAATATTGCACGGAAAGAAGCTGATGATGACGTCCCAGAACCTGTAGAGGAGAAAAGGCTCGCGATATGGGG
TTCAGAGGTACCCGATGATCTGGTGTTGGATGAGAAGCTACTAGCTGAATCGCTGAAGAAGGAAGACCAGAGGAAGAAAGAGGAGAAGGACGAGAGGAAA
CGCAAGTACAATGTGAAGTGGAATGATCAGGTTACTGTGGAGGACATGGAGGCATATCGGATGAAGAAAGTGCACCATGATGATCCAATGAAGGATTTCC
TTAACTGA
AA sequence
>Lus10028956 pacid=23177324 polypeptide=Lus10028956 locus=Lus10028956.g ID=Lus10028956.BGIv1.0 annot-version=v1.0
MATASGAFKSREDHRKQMELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNPDTPSLKHQRKWKPDPIYTKSWYDRGAKVYQANKYRKGACQNCG
AETHDLKSCMERPRKVGAKWTNMHIAPDEKIETFELDYDGKRDRWNGYDAASYALVVERYEARDAARSRYVKEQQLKKLEERNNGQTAEDVSDEDNDEDD
LRVDEAKVDESKQMDFAKVEKRVRTTGGGSTGTVRNLRIREDTAKYLLNLDVNSAYYDPKTRSMREDPLPDADPNEKFYLGDNQYRNSGQAEEFKQLNVH
AWEAFDKGQDIHMQAAPSQAELLYKNFKVIKEKLETQTKDQMLEKYGNAASLDPIPKELLLGQSERQVEYDRAGRFIKGQEVALPKSKYEEDVYVNNHTS
VWGSWWKDHQWGYKCCRQSIRNSYCTGAAGIKAAEAATDLMKANIARKEADDDVPEPVEEKRLAIWGSEVPDDLVLDEKLLAESLKKEDQRKKEEKDERK
RKYNVKWNDQVTVEDMEAYRMKKVHHDDPMKDFLN

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G65660 SMP1 SWELLMAP 1, Pre-mRNA splicing ... Lus10028956
[exp]
0 1
AT5G58340 MYB myb-like HTH transcriptional r... Lus10020771
[exp]
1.0 0.9219
AT4G21790 ATTOM1, TOM1 tobamovirus multiplication 1 (... Lus10020054
[exp]
2.8 0.9041
AT4G01000 Ubiquitin-like superfamily pro... Lus10012629
[exp]
4.0 0.8974
AT5G58340 MYB myb-like HTH transcriptional r... Lus10017319
[exp]
7.1 0.8790
AT4G15880 ATESD4, ESD4 EARLY IN SHORT DAYS 4, Cystein... Lus10023104
[exp]
8.1 0.8740
AT3G24490 Trihelix Alcohol dehydrogenase transcri... Lus10019388
[exp]
9.2 0.9118
AT3G47990 SIS3 SUGAR-INSENSITIVE 3 (.1) Lus10042126
[exp]
11.0 0.8896
AT3G52220 unknown protein Lus10038762
[exp]
12.3 0.9181
AT5G48160 OBE2 OBERON2, Protein of unknown fu... Lus10012327
[exp]
12.4 0.8896
AT4G13630 Protein of unknown function, D... Lus10022791
[exp]
12.6 0.8896

Lus10028956 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.