Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16650 758 / 0 O-fucosyltransferase family protein (.1) AT1G76270 510 / 2e-176 O-fucosyltransferase family protein (.1) AT4G38390 506 / 2e-175 RHS17 root hair specific 17 (.1) AT1G20550 500 / 1e-172 O-fucosyltransferase family protein (.1) AT1G14970 312 / 2e-99 O-fucosyltransferase family protein (.1) AT2G01480 305 / 1e-96 O-fucosyltransferase family protein (.1) AT2G03280 280 / 3e-88 O-fucosyltransferase family protein (.1.2) AT1G14020 279 / 2e-87 O-fucosyltransferase family protein (.1) AT5G64600 275 / 8e-86 O-fucosyltransferase family protein (.1) AT2G37980 276 / 4e-85 O-fucosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007481 [exp] 1055 / 0 AT4G16650 766 / 0.0 O-fucosyltransferase family protein (.1) Lus10007792 [exp] 905 / 0 AT4G16650 751 / 0.0 O-fucosyltransferase family protein (.1) Lus10004729 [exp] 898 / 0 AT4G16650 756 / 0.0 O-fucosyltransferase family protein (.1) Lus10013234 [exp] 522 / 0 AT1G76270 791 / 0.0 O-fucosyltransferase family protein (.1) Lus10030754 [exp] 519 / 6e-180 AT1G76270 787 / 0.0 O-fucosyltransferase family protein (.1) Lus10023948 [exp] 511 / 5e-177 AT1G20550 697 / 0.0 O-fucosyltransferase family protein (.1) Lus10012270 [exp] 501 / 7e-173 AT1G76270 758 / 0.0 O-fucosyltransferase family protein (.1) Lus10014444 [exp] 470 / 3e-161 AT1G20550 650 / 0.0 O-fucosyltransferase family protein (.1) Lus10003715 [exp] 306 / 2e-97 AT2G01480 897 / 0.0 O-fucosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G077500 [exp] 815 / 0 AT4G16650 785 / 0.0 O-fucosyltransferase family protein (.1) Potri.001G157400 [exp] 799 / 0 AT4G16650 773 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G249900 [exp] 528 / 0 AT1G76270 776 / 0.0 O-fucosyltransferase family protein (.1) Potri.004G183200 [exp] 526 / 0 AT1G76270 713 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G011100 [exp] 520 / 1e-180 AT1G76270 759 / 0.0 O-fucosyltransferase family protein (.1) Potri.009G143100 [exp] 519 / 6e-180 AT1G76270 699 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G130600 [exp] 303 / 8e-96 AT2G01480 912 / 0.0 O-fucosyltransferase family protein (.1) Potri.010G111500 [exp] 302 / 1e-95 AT2G01480 906 / 0.0 O-fucosyltransferase family protein (.1) Potri.010G164700 [exp] 281 / 2e-88 AT1G14020 781 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G090600 [exp] 280 / 5e-88 AT1G14020 776 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF10250 [flax] [poplar] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10028957 pacid=23177218 polypeptide=Lus10028957 locus=Lus10028957.g ID=Lus10028957.BGIv1.0 annot-version=v1.0 ATGCCGGCGCAGTCACAGCAACCTAACGGTAAAGTGAGCACCACCGCCTCTGGCGGCGGCGGGGTAGGAAAGATTCAGAGCAGTAGTAATCATCACAGTG AGTGGTGCTGGTGGCGGGGGAGCTGGAGAGCGTCCTTGGCGCAAGGGCTGCAGATGCAATGTAGGAAGATCCGGTGGTCGTTAGTCTGCGGTTTGATGCT CTTCGCGCTTGGGATGGTCTCGCTCTTCACTGGACATATGGCGTCTGATCTCGAGTGGTATTCTCAGCGGCTGGTTAAGCGGACCCTCTACTCCAGATTT AGTGGTATTCGTCGTGAGCCTATTGATATCTGGAAATCCAAGTACTCAAAATTGTTCTATGGATGCAGCGAAAGGGGACGCAAATATGCTCCTGCTACAC CTCAAAGAGTATCCAATGGGTATCTGCTTATAGCAGCAAGTGGAGGACTCAACCAAGAACGAACAGGAATAACAGATGCTGTAGTTGTTGCGAGGTTTCT TAATGCCACACTAGTTGTTCCTGAGCTGGATCACCAATCTTATTGGAAAGATGATAGTGATTTTGTTGATATATTTGACGTTGATTGGTTCATCTCTTAC CTTGCGAAAGATGTCACCATTGTTAAAAGAGTTCCCGATAAAGTTATGCGATCAATGGATAAGCCTCCATATACTATGCGGGTCCCAAGAAAATCCCCGC CAGAATATTACATGGACCAAGTTCTACCTATATTATCAAGGAGAAAAGTTCTACAATTGACGAAGTTTGATTATAGGCTTGGATATGAGCTTGATGAAGA ATTGCAAAGGTTGCGCTGCCGGGTTAACTATCATGCTCTGAGATTCACAAAGCCAATACGTGAAATTGGCCAAAAGATTGTTATGAAAATGAAGATGATG GCAACACGTTTTATTGCTATTCACTTGAGGTTTGAACCTGATATGTTGGCCTTCTCTGGTTGTTACTTTGGAGGCGGTGACAAAGAGAGATACGAGCTCA GTCAAATAAGGAAAAGATGGGAAACATTGCCGGACTTGAGTCCCGAAGATGAGAGGGCAAGAGGGAAATGTCCTCTAACTCCTCATGAAGTAGGACTGAT GCTGCGCGCATTGGGTTTCGCTAATGATACGTACCTCTTTGTTGCATCTGGAGAAATATACGGCGGGGAAGAAACTTTACGACCCCTTAAAGAACTATTT CCCAACTTCTACACAAAGGAGATGCTTGCTAATGATGAGTTGAAACCATTCCTTCCTTACTCTTCTCGCTTGGCGGCTATAGACTACATTGTCTGCGACG AGAGTGATGTCTTTGTCACAAACAACAACGGAAATATGGCAAAGATTCTCGCAGGACGAAGGAGGTACGCAGGGCACAAGAGGACCATCCGACCGAATGC TAAGAAGCTTAGCGCATTGTTCCTGAAAAGACATAAGATGGACTGGGCCACCTTCTCCAGAAAGGTAAAATCTTGTCAGAGAGGTTTCATGGGGGAACCA GATGACCCAAAACCTAGCCGAGGCGAGTTCCATGAACATCCTGCTTCTTGTATCTGCGAGAAACCATTCACCGAGGACGGGAACCTCAAGGAAGACATTG CTTACGCACAAAATCATACTTCTTTTAACCCGAAGAGGCAATGA
AA sequence Show only first row Show all	>Lus10028957 pacid=23177218 polypeptide=Lus10028957 locus=Lus10028957.g ID=Lus10028957.BGIv1.0 annot-version=v1.0 MPAQSQQPNGKVSTTASGGGGVGKIQSSSNHHSEWCWWRGSWRASLAQGLQMQCRKIRWSLVCGLMLFALGMVSLFTGHMASDLEWYSQRLVKRTLYSRF SGIRREPIDIWKSKYSKLFYGCSERGRKYAPATPQRVSNGYLLIAASGGLNQERTGITDAVVVARFLNATLVVPELDHQSYWKDDSDFVDIFDVDWFISY LAKDVTIVKRVPDKVMRSMDKPPYTMRVPRKSPPEYYMDQVLPILSRRKVLQLTKFDYRLGYELDEELQRLRCRVNYHALRFTKPIREIGQKIVMKMKMM ATRFIAIHLRFEPDMLAFSGCYFGGGDKERYELSQIRKRWETLPDLSPEDERARGKCPLTPHEVGLMLRALGFANDTYLFVASGEIYGGEETLRPLKELF PNFYTKEMLANDELKPFLPYSSRLAAIDYIVCDESDVFVTNNNGNMAKILAGRRRYAGHKRTIRPNAKKLSALFLKRHKMDWATFSRKVKSCQRGFMGEP DDPKPSRGEFHEHPASCICEKPFTEDGNLKEDIAYAQNHTSFNPKRQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16650			O-fucosyltransferase family pr...		Lus10028957 [exp]	0	1
AT4G16650			O-fucosyltransferase family pr...		Lus10007481 [exp]	1.0	0.7786
AT1G05280			Protein of unknown function (D...		Lus10027153 [exp]	4.9	0.7101
AT3G53900		UPP, PYRR	PYRIMIDINE R, uracil phosphori...		Lus10012654 [exp]	11.5	0.7337
AT3G09430			unknown protein		Lus10023771 [exp]	12.4	0.6431
AT3G56850	bZIP	DPBF3, AREB3	ABA-responsive element binding...		Lus10008929 [exp]	13.7	0.7300
AT2G14520			CBS domain-containing protein ...		Lus10020494 [exp]	17.5	0.6778
AT3G51750			unknown protein		Lus10002202 [exp]	19.1	0.6443
AT5G45770		AtRLP55	receptor like protein 55 (.1)		Lus10039985 [exp]	26.9	0.7145
AT2G18280	TUB	AtTLP2	tubby like protein 2 (.1.2)		Lus10028309 [exp]	29.0	0.6769
AT4G21610		LOL2	lsd one like 2 (.1)		Lus10020766 [exp]	30.4	0.7086

Compare expression of checked genes

Lus10028957 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.