Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47435 498 / 2e-179 formyltetrahydrofolate deformylase, putative (.1.2) AT4G17360 484 / 2e-173 Formyl transferase (.1) AT1G31220 72 / 2e-14 Formyl transferase (.1) AT1G66520 56 / 2e-08 PDE194 pigment defective 194, formyltransferase, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007482 [exp] 103 / 4e-28 AT4G17360 99 / 7e-27 Formyl transferase (.1) Lus10040974 [exp] 68 / 1e-12 AT1G31220 327 / 3e-112 Formyl transferase (.1) Lus10013428 [exp] 65 / 1e-11 AT1G31220 326 / 4e-112 Formyl transferase (.1) Lus10000450 [exp] 56 / 1e-08 AT1G66520 510 / 0.0 pigment defective 194, formyltransferase, putative (.1) Lus10010978 [exp] 54 / 7e-08 AT1G66520 496 / 2e-177 pigment defective 194, formyltransferase, putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G078000 [exp] 527 / 0 AT5G47435 484 / 7e-174 formyltetrahydrofolate deformylase, putative (.1.2) Potri.001G156600 [exp] 518 / 0 AT5G47435 476 / 2e-170 formyltetrahydrofolate deformylase, putative (.1.2) Potri.012G107500 [exp] 68 / 9e-13 AT1G31220 337 / 1e-116 Formyl transferase (.1) Potri.017G123300 [exp] 55 / 3e-08 AT1G66520 516 / 0.0 pigment defective 194, formyltransferase, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00551 [flax] [poplar] Formyl_trans_N Formyl transferase
Representative CDS sequence Show only first row Show all	>Lus10028958 pacid=23177223 polypeptide=Lus10028958 locus=Lus10028958.g ID=Lus10028958.BGIv1.0 annot-version=v1.0 ATGACCACGATTCTACGGAGGAGCAAGATTCCTTCAACCCTTCTTCCCCAATTCATCGGGTTCGCTAGCAGCAGGTCAATTAAGTCCTTCAGATTCCCCG GCGAGCCTCTCGACTCTTCCTCCATCACCTATGGCATCCATGTCTTCCAATGCCCCGATGCGCGCGGTATCGTTGCTAAGCTATCGGATTGCATTGCATC CAGAGGCGGCAATATCCTCGGCGCTGATGTCTTCGTCCCAGAAAATAAGGAGGTTTTCTATTCCAGAAGCGAGTTCATTTTCGACCATGTAAAATGGCCT AGAGCAGAAATGGAAGAGGACTTTCTGAAGCTATCTAAAACATTCAACGCCACGAGATCTGTTGTCCGAGTGCCTGATCTTGACCGCAAGTACAAAATCG CTTTACTTGCTTCAAAACAGGAACACTGTCTGACTGATATGCTGCATGTATGGCAGGATGGGAAACTCCCGGTCGAGATAGTTTGTGTAATTAGTAACCA TGAAAGAGGTGAGAACACACACGTGATTCGTTTTCTCGAAAGAAATGGGATTCCGTATCATTATGTTGACACAACCACAGACAATAAAAGGGAGGAGGAG ATCTTGAATTTGGTCCAGGATACTGATTTCTTGGTACTTGCCAGGTACATGCAGGTATTATCTGGTAATTTCTTGAGAAGCTATGGAAAAGATGTAATTA ATATTCACCATGGGCTTCTTCCATCATTTAAAGGCGGATTCCCTTCAAAGCAGGCTTTTGATGCAGGCGTAAAACTGATTGGAGCAACATCTCATTTTGT CACTGAAGAGCTTGATTCTGGTCCTATTATTGAGCAGATGGTGGAGAGAGTTACCCACCGAGATAATCTACGGAGTTTCATCCAGAAATCGGAGAACCTA GAGAAACAATGTCTTGCCAAAGCTATAAAGTCCTACTGTGAACTAAGAGTATTGCCTTACGAGCATAACAAAACTGTTGTATTTTGA
AA sequence Show only first row Show all	>Lus10028958 pacid=23177223 polypeptide=Lus10028958 locus=Lus10028958.g ID=Lus10028958.BGIv1.0 annot-version=v1.0 MTTILRRSKIPSTLLPQFIGFASSRSIKSFRFPGEPLDSSSITYGIHVFQCPDARGIVAKLSDCIASRGGNILGADVFVPENKEVFYSRSEFIFDHVKWP RAEMEEDFLKLSKTFNATRSVVRVPDLDRKYKIALLASKQEHCLTDMLHVWQDGKLPVEIVCVISNHERGENTHVIRFLERNGIPYHYVDTTTDNKREEE ILNLVQDTDFLVLARYMQVLSGNFLRSYGKDVINIHHGLLPSFKGGFPSKQAFDAGVKLIGATSHFVTEELDSGPIIEQMVERVTHRDNLRSFIQKSENL EKQCLAKAIKSYCELRVLPYEHNKTVVF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47435			formyltetrahydrofolate deformy...		Lus10028958 [exp]	0	1
AT4G14210		PDE226, PDS3	PIGMENT DEFECTIVE 226, phytoen...		Lus10025080 [exp]	2.2	0.8724
AT3G13320		ATCAX2, CAX2	cation exchanger 2 (.1)		Lus10006068 [exp]	3.7	0.8685
AT1G08980		ATTOC64-I, ATAM...	ARABIDOPSIS THALIANA TRANSLOCO...		Lus10004466 [exp]	3.9	0.8679
AT1G10310			NAD(P)-binding Rossmann-fold s...		Lus10042410 [exp]	4.9	0.8511
AT2G45990			unknown protein		Lus10014766 [exp]	6.3	0.8060
AT1G68830		STN7	STT7 homolog STN7 (.1)		Lus10034273 [exp]	8.1	0.8548
AT4G35640		ATSERAT3;2	serine acetyltransferase 3;2 (...		Lus10010679 [exp]	9.7	0.7732
AT3G61080			Protein kinase superfamily pro...		Lus10036555 [exp]	9.8	0.8603
AT4G01995			unknown protein		Lus10012004 [exp]	9.8	0.8282
AT1G75100		JAC1	J-domain protein required for ...		Lus10018811 [exp]	9.9	0.8405

Compare expression of checked genes

Lus10028958 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.