Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57000 352 / 3e-122 nucleolar essential protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007483 [exp] 588 / 0 AT3G57000 347 / 1e-120 nucleolar essential protein-related (.1) Lus10032054 [exp] 245 / 8e-81 AT3G57000 239 / 2e-78 nucleolar essential protein-related (.1) Lus10035222 [exp] 245 / 1e-80 AT3G57000 239 / 2e-78 nucleolar essential protein-related (.1) Lus10032053 [exp] 154 / 4e-45 AT3G57000 163 / 1e-48 nucleolar essential protein-related (.1) Lus10035220 [exp] 152 / 2e-44 AT3G57000 165 / 3e-49 nucleolar essential protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G040600 [exp] 360 / 9e-126 AT3G57000 349 / 1e-121 nucleolar essential protein-related (.1) Potri.016G037500 [exp] 353 / 4e-123 AT3G57000 338 / 4e-117 nucleolar essential protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0098 [flax] [poplar] SPOUT PF03587 [flax] [poplar] EMG1 EMG1/NEP1 methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10028959 pacid=23177239 polypeptide=Lus10028959 locus=Lus10028959.g ID=Lus10028959.BGIv1.0 annot-version=v1.0 ATGGTGAGGCCGTTTGGGGTCAAGGGGCCGAAGAGGAAGAGGAAAGAGCAGAAATTTGACAGGGAAGAAACTCCGGAGCAGGAAACTGCTGCGGTAGAGG AGAAGAATGATGAGAAGGATATTGATGCGACTAATGACATGGTTGGCGTCCCAATCGTTGAGATTGACCGACAGAGCAAAAAACCTGGGGTTATTTTCGT GCTGGAGAAGGCCTCTTTGGAAGTTGCCAAAGTTGGAAAGACTTACCAGATATTGAATTCGGATGATCATGCGAATTTCCTGATGAAAAACAACAAGAAC CCTGCTGATTACCGGCCTGACATTGTTCACCAGGCTCTCCTTTCAATACTAGATAGCCCGCTGAATAAGGCTGGGAGATTGAAGGCTGTATATGTAAAAA CCGAGAAAGGTGTCCTTTTCAAAGTTAATCCACAAGTGCGTATACCACGGACATATAAGCGTTTTGCCGGTATTATGTTGCAACTGCTTCAGAAACTCAG TATATCTGCTACGGGTAAGCGGGAGAAGCTTTTGCGTGTGATAAAGAGTCCAGTAACCCAGTATCTACCAGTCAGCTCCCGCAAAATAGGTTTTTCTTTC AGTTCGGATAAGTTGGTCCAAATGAGCAAGTACGTGGAAACAGTTGGTAACGACGATGATCTTGTGTTTGTGGTTGGTGCTATGGCTCATGGGAAAATCG ACTGTGATTACATTGAAGATTTTATAGCTAGTATGCTTGTTTCTCCCCATCATACCATGCTGAGTTTTCTTGAATCCATGCCATGTTGGTCATGTCACCA CTCTCATAATGTTGTATGTGCTGCAGTTTCTGGGTATCCGATGAGCGCTGCATGGTGTATCGCAAGGATCTGCGAGGCTTTATCGAACAAGTGGGGTGTC TTGTGA
AA sequence Show only first row Show all	>Lus10028959 pacid=23177239 polypeptide=Lus10028959 locus=Lus10028959.g ID=Lus10028959.BGIv1.0 annot-version=v1.0 MVRPFGVKGPKRKRKEQKFDREETPEQETAAVEEKNDEKDIDATNDMVGVPIVEIDRQSKKPGVIFVLEKASLEVAKVGKTYQILNSDDHANFLMKNNKN PADYRPDIVHQALLSILDSPLNKAGRLKAVYVKTEKGVLFKVNPQVRIPRTYKRFAGIMLQLLQKLSISATGKREKLLRVIKSPVTQYLPVSSRKIGFSF SSDKLVQMSKYVETVGNDDDLVFVVGAMAHGKIDCDYIEDFIASMLVSPHHTMLSFLESMPCWSCHHSHNVVCAAVSGYPMSAAWCIARICEALSNKWGV L

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57000			nucleolar essential protein-re...		Lus10028959 [exp]	0	1
AT3G57000			nucleolar essential protein-re...		Lus10007483 [exp]	4.9	0.8007
AT1G25260			Ribosomal protein L10 family p...		Lus10001072 [exp]	11.1	0.7929
AT5G57910			unknown protein		Lus10036255 [exp]	19.2	0.7737
AT5G18100		CSD3	copper/zinc superoxide dismuta...		Lus10013615 [exp]	19.5	0.7783
AT2G38570			unknown protein		Lus10022733 [exp]	22.4	0.7707
AT4G21510			F-box family protein (.1)		Lus10022370 [exp]	24.2	0.7636
AT2G35210		RPA, AGD10, MEE...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10000902 [exp]	25.5	0.7343
AT4G21760		BGLU47	beta-glucosidase 47 (.1)		Lus10032659 [exp]	26.1	0.7449
AT5G60335			Thioesterase superfamily prote...		Lus10009162 [exp]	26.7	0.7472
AT1G14340			RNA-binding (RRM/RBD/RNP motif...		Lus10007254 [exp]	27.1	0.7374

Compare expression of checked genes

Lus10028959 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.